https://github.com/camlloyd/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
https://github.com/campbio/decontx
Methods for decontamination of single cell data
https://github.com/camriddell/modin
Modin: Scale your Pandas workflows by changing a single line of code
https://github.com/camriddell/riskycontrib
Presentation and computational implementation of a two-asset model with an income contribution scheme.
https://github.com/cancerit/hairpin-wrapper
Ease-of-use wrapper around Mathijs' Sanders AdditionalBamStatistics cruciform-DNA detection algorithm
https://github.com/cancerit/hairpin2
artefact flagging algorithm based on Ellis et al. 2020 (DOI: 10.1038/s41596-020-00437-6) for LCM sequencing
https://github.com/cancerit/pycrisprcleanr
Python version of CRISPRcleanR: An R package for unsupervised identification and correction of gene independent cell responses to CRISPR-cas9 targeting
https://github.com/cancerit/casm-smart-phase
Docker and associated CASM utility scripts for Smart-Phase (https://github.com/paulhager/smart-phase)
https://github.com/cancerit/dockstore-pycrisprcleanr
Dockersised pyCRISPRcleanR
https://github.com/cancerit/cgpbigwig
BigWig manpulation tools using libBigWig and htslib
https://github.com/cancerit/c-sar
Data will be added ahead of poster/conference
https://github.com/cancerit/valiant
Variant Library Annotation Tool (VaLiAnT) is an oligonucleotide library design and annotation tool for Saturation Genome Editing and other Deep Mutational Scanning experiments