DuneCopasi
DuneCopasi: A multi-compartment reaction-diffusion simulator for systems biology - Published in JOSS (2024)
PowerSystems
Data structures in Julia to enable power systems analysis. Part of the Scalable Integrated Infrastructure Planning Initiative at the National Renewable Energy Lab.
PyCS3
PyCS3: A Python toolbox for time-delay measurements in lensed quasars - Published in JOSS (2020)
gkwreg: An R Package for Generalized Kumaraswamy Regression Models for Bounded Data
gkwreg: An R Package for Generalized Kumaraswamy Regression Models for Bounded Data - Published in JOSS (2026)
fars_cleaner: A Python package for downloading and pre-processing vehicle fatality data in the US
fars_cleaner: A Python package for downloading and pre-processing vehicle fatality data in the US - Published in JOSS (2022)
DeepTrees: Tree Crown Segmentation and Analysis in Remote Sensing Imagery with PyTorch
DeepTrees: Tree Crown Segmentation and Analysis in Remote Sensing Imagery with PyTorch - Published in JOSS (2025)
Synthesizer: Synthetic Observables for Modern Astronomy
Synthesizer: Synthetic Observables for Modern Astronomy - Published in JOSS (2026)
vidore-benchmark
Vision Document Retrieval (ViDoRe): Benchmark. Evaluation code for the ColPali paper.
fusion-blossom
A fast minimum-weight perfect matching solver for quantum error correction