https://github.com/cordmaur/fabdem-brazil-south
FABDEM for the South region of Brazil, published as a STAC catalog.
https://github.com/core-unit-bioinformatics/workflow-smk-ont-basecalling-correction
Workflow for the basecalling and error correction of ONT data.
https://github.com/core-unit-bioinformatics/.github
The CUBI public GitHub profile
https://github.com/core-unit-bioinformatics/tcellextrect
Fork of Bentham TcellExTRECT tool.
https://github.com/core-unit-bioinformatics/workflow-smk-varlociraptor-variant-calling
A forked Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
https://github.com/core-unit-bioinformatics/reference-container
Build repository for reference container
https://github.com/cropgeeks/barleypantranscriptome
Barley pan-transcriptome paper -- analysis code
https://github.com/cptanalatriste/aco-set-covering
Ant-colony optimisation algorithms for set-covering
https://github.com/cptanalatriste/jira-data-miner
Tools for analyzing JIRA Repositories
https://github.com/cptanalatriste/priority-assigner
A classifier for a bug report priority
https://github.com/cptanalatriste/priority-inflation-site
The website for the Priority Inflation project
https://github.com/cptanalatriste/robot-assisted-evacuation
An agent-based evacuation model to study socio-cultural factors influencing the evacuation process