https://github.com/cbg-ethz/wisepulse
WISE Loculus with V-Pipe – Infra for start-to-end viral wastewater analysis.
posydon
POSYDON is a next-generation single and binary-star population synthesis code incorporating full stellar structure and evolution modeling with the use of MESA.
https://github.com/bham-carpentries/python-intermediate-development
"Intermediate Research Software Development Skills (Python)" Lesson Material
https://github.com/bmmtstb/adventofcode
Code for the Advent of Code challenges
https://github.com/bmorris3/numpyro
Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.
sampling_effort_data
Open access data on Mosquito Alert participation and sampling effort.
xiaoexpansion
Micropython, Platformio, and Arduino examples using Seeed XIAO expansion board for multiple MCUs
msa
Script to process miniscope data and quantify activity (e.g. spontaneous peaks and correlations) on arbitrary epoch definitions.
papers-past-open-data-extraction
This Python script uses multiprocessing to efficiently extract article data from METS/ALTO XML (in tar.gz files) in the National Library of New Zealand's Papers Past open data.
https://github.com/cmkobel/roary
Rapid large-scale prokaryote pan genome analysis
collector-app
A web app for applicants: Enter the RESQUE indicators for your 10 best papers.
africa-metaanalysis-archive
This is the archive for code used to generate results reported in the paper titled: A META-ANALYSIS OF GUT MICROBIOME RESEARCH IN MALNOURISHED AFRICAN POPULATIONS: A NATURAL LANGAUGE PROCESSING APPROACH
rak-lowmem-communities-cuda
Design of memory-efficient CUDA-based Parallel Label Propagation Algorithm (LPA), aka RAK, for community detection.