OpenTripPlanner for R
OpenTripPlanner for R - Published in JOSS (2019)
ASSUME - Agent-based Simulation for Studying and Understanding Market Evolution
ASSUME - Agent-based Simulation for Studying and Understanding Market Evolution - Published in JOSS (2025)
hal9001
hal9001: Scalable highly adaptive lasso regression in R - Published in JOSS (2020)
ReferenceSeeker
ReferenceSeeker: rapid determination of appropriate reference genomes - Published in JOSS (2020)
MemCNN
MemCNN: A Python/PyTorch package for creating memory-efficient invertible neural networks - Published in JOSS (2019)
SleepECG
SleepECG: a Python package for sleep staging based on heart rate - Published in JOSS (2023)
pycoQC, interactive quality control for Oxford Nanopore Sequencing
pycoQC, interactive quality control for Oxford Nanopore Sequencing - Published in JOSS (2019)
AixWeather
AixWeather: A Weather Data Generation Tool for Building Energy System Simulations. Pull, Transform, Export. - Published in JOSS (2025)
getCRUCLdata
getCRUCLdata: Use and Explore CRU CL v. 2.0 Climatology Elements in R - Published in JOSS (2017)
Building, Importing, and Exporting GEXF Graph Files with rgexf
Building, Importing, and Exporting GEXF Graph Files with rgexf - Published in JOSS (2021)
SampleDB
SampleDB: A sample and measurement metadata database - Published in JOSS (2021)
Af-analysis
Af-analysis: a Python package for Alphafold analysis - Published in JOSS (2025)
stacks
stacks: Stacked Ensemble Modeling with Tidy Data Principles - Published in JOSS (2022)
Teaspoon
Teaspoon: A Python Package for Topological Signal Processing - Published in JOSS (2025)
BayesianNetwork
BayesianNetwork: Interactive Bayesian Network Modeling and Analysis - Published in JOSS (2018)
Fast Resampling and Monte Carlo Methods in Python
Fast Resampling and Monte Carlo Methods in Python - Published in JOSS (2023)
modelStudio
modelStudio: Interactive Studio with Explanations for ML Predictive Models - Published in JOSS (2019)
Tashaphyne
Tashaphyne: A Python package for Arabic Light Stemming - Published in JOSS (2024)