https://github.com/biop/qupath-extension-abba
QuPath extension for Aligning Big Brains and Atlases
https://github.com/biop/qupath-extension-cellpose
an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
https://github.com/biop/quick-start-czi-reader
A bio-formats image reader for CZI that starts faster
https://github.com/biop/gist-query
Query Gists by the BIOP and add them into a table format compatible with C4Science
https://github.com/biop/bigdataviewer-selector
Source Selection mode for BigDataViewer
https://github.com/biop/multiview-reconstruction
Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
https://github.com/biop/qupath-extension-sam
QuPath extension for Segment Anything Model (SAM)
https://github.com/biop/ijab-tracmit
TRACMIT: an effective pipeline for tracking and analyzing cells on micropatterns through mitosis
https://github.com/biophys-turin/keywordtcga
Repository TCGA analysis with miRNA
https://github.com/biopragmatics/.github
Software and curated data artifacts for standardizing and processing biomedical data and knowledge
https://github.com/biopragmatics/biolookup-docker
🐋 A dockerfile for the frontend to the Biolookup Service
https://github.com/biopsyk/imagelib
Dockerfiles for common software compositions at IBP
https://github.com/biopython/biopython-wheels
Automated compilation of Python wheel binary packages for Biopython
https://github.com/biopython/dist
Distribution of Biopython releases and documentation via GitHub Pages