remBoot
remBoot: An R package for Random Encounter Modelling - Published in JOSS (2017)
MiNAA
MiNAA: Microbiome Network Alignment Algorithm - Published in JOSS (2024)
DscoreApp
DscoreApp: An user-friendly web application for computing the Implicit Association Test D-score - Published in JOSS (2019)
CliquePercolation
CliquePercolation: An R Package for conducting and visualizing results of the clique percolation network community detection algorithm - Published in JOSS (2021)
tissueloc
tissueloc: Whole slide digital pathology image tissue localization - Published in JOSS (2019)
text2map
text2map: R Tools for Text Matrices - Published in JOSS (2022)
TrackSegNet
TrackSegNet: a tool for trajectory segmentation into diffusive states using supervised deep learning - Published in JOSS (2024)
COSMO
COSMO: Accelerated ADMM-based solver for convex conic optimisation problems (LP, QP, SOCP, SDP, ExpCP, PowCP). Automatic chordal decomposition of sparse semidefinite programs.
VCC
VCC: A framework for building containerized reproducible cluster software environments - Published in JOSS (2017)
MultichannelGPR
MultichannelGPR: A MATLAB tool for Ground Penetrating Radar data processing - Published in JOSS (2024)
Genotify
Genotify: Fast, lightweight gene lookup and summarization - Published in JOSS (2018)
microViz
microViz: an R package for microbiome data visualization and statistics - Published in JOSS (2021)
Masks2Metrics (M2M)
Masks2Metrics (M2M): A Matlab Toolbox for Gold Standard Morphometrics - Published in JOSS (2018)
EMBERS
EMBERS: Experimental Measurement of BEam Responses with Satellites - Published in JOSS (2020)
NLSIG-COVID19Lab
NLSIG-COVID19Lab: A modern logistic-growth tool (nlogistic-sigmoid) for descriptively modelling the dynamics of the COVID-19 pandemic process - Published in JOSS (2021)
AIgarMIC
AIgarMIC: a Python package for automated interpretation of agar dilution minimum inhibitory concentration assays - Published in JOSS (2024)
umpire
An application-focused API for memory management on NUMA & GPU architectures
GMSimViz
GMSimViz: Automated 3D Visualization of Ground Motion Simulation with Generic Mapping Tools (GMT) - Published in JOSS (2019)