Projects

Updated 11 months ago

nico_tutorial • Rank 2.8 • Science 67%

A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and statistically enriched covariation of gene programs between interacting cell types from the neighborhood.

merfish niche-covariation niche-modelling nico scrna-seq scrna-seq-analysis scrna-seq-data scrnaseq seqfish spatial-transcriptomics

Updated 11 months ago

https://github.com/alleninstitute/tasic2016data • Rank 3.3 • Science 54%

Single cell transcriptomic data from Tasic, et al. (2016)

scrattch scrna-seq-data transcriptomics

Updated 11 months ago

SuperCell • Science 26%

Coarse-graining of large single-cell RNA-seq data into metacells

coarse-graining r-package scrna-seq-analysis scrna-seq-data

ecosyste.ms

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Open Source Science

nico_tutorial • Rank 2.8 • Science 67%

https://github.com/alleninstitute/tasic2016data • Rank 3.3 • Science 54%

SuperCell • Science 26%