https://github.com/alexlenail/amulet
A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.
https://github.com/alexlipp/poopy
Object Oriented Python package for interfacing with English Water Companies EDM data
https://github.com/alexlipp/sewage-map
Realtime mapping the downstream impact of Combined Sewage Overflow discharge events in non-tidal rivers across England and Wales
https://github.com/alexlipp/directional-wavelets
Supplementary code relating to the paper "Flow directions of drainage networks set by the mantle" (sub judice)
https://github.com/alexlipp/detrital-wasserstein
Calculate 2nd Wasserstein distance between two example mineral age distributions.
https://github.com/alexlipp/predict-river-chem
Code and data for the publication "River sediment geochemistry as a conservative mixture of source regions: Observations and predictions from the Cairngorms, UK"
https://github.com/alexlipp/autocatchments
A personal package to make analysing drainage networks easier
https://github.com/alexose/schedulr
Schedule code to run at a given time. Collect the results in a database.
https://github.com/alexose/dorothy
A minimalist, open-source, low-cost sensor platform built around the LoRa protocol
https://github.com/alexpof/web_coloredcubedance
A web interface for composing (with) automorphisms in the colored Cube Dance
https://github.com/alexpof/numberpieces_analysis
Code for analyzing John Cage's Number Pieces
https://github.com/alexpreynolds/higlass-bigbed-datafetcher
Provide remote access to remotely-hosted bigBed files to HiGlass client applications
https://github.com/alexpreynolds/higlass
Fast, flexible and extensible genome browser.
https://github.com/alexpreynolds/cull-exemplars
Filter lower-scoring, neighboring genomic intervals within a specified distance
https://github.com/alexpreynolds/react-seqlogo-demo
Sequence logo generation with d3
https://github.com/alexpreynolds/recommender-proxy
Web service to pattern matching and retrieval tool
https://github.com/alexpreynolds/kmer-boolean
Test if a kmer is or is not in a set of sequences
https://github.com/alexpreynolds/kmer-counter-emilib
Count canonical kmers with Emil Ernerfeldt's emilib::HashMap
https://github.com/alexpreynolds/generic-list-react-app
Read in a list of strings from a file and render it to a pull-down in React
https://github.com/alexpreynolds/tfbs-bed7-to-sam
Convert TFBS data in BED6+1 to SAM
https://github.com/alexpreynolds/eforge-www
Web client and services for eFORGE
https://github.com/alexpreynolds/svg-animation-test
A project to test SVG element animation
https://github.com/alexpreynolds/epilogos
Methods for summarizing and visualizing multi-biosample functional genomic annotations
https://github.com/alexpreynolds/sample
Performs memory-efficient reservoir sampling on very large input files delimited by newlines
https://github.com/alexpreynolds/tabix-service
A nodejs-based service for requests for tabix-indexed genomic data
https://github.com/alexpreynolds/higlass-server
Server component for HiGlass that manages and serves tiled data
https://github.com/alexredplanet/json-selector
Simple UI for selecting a subset of fields from a set of json files and producing a single json file as result.
https://github.com/alexriss/testjuliaci.jl
Test package for CI and PackageCompiler
https://github.com/alexriss/imagex
Python scripts to read and analyze scanning probe images.
https://github.com/alexriss/gridex
Analyze STM/AFM grid spectroscopy data. Currently works with Nanonis data files in ASCII or binary file format.
https://github.com/alexrockhill/research-projects
Analysis scripts to reproduce research results
https://github.com/alexrockhill/mne-bids-pipeline
Automatically process entire electrophysiological datasets using MNE-Python.
https://github.com/alexrockhill/pyvista
3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)
https://github.com/alexrockhill/bpc_jupyter
Jupyter notebook for the basis profile curves
https://github.com/alexrockhill/sphinx-gallery
Sphinx extension for automatic generation of an example gallery
https://github.com/alexrockhill/jspsych
A JavaScript library for creating and running behavioral experiments in a web browser
https://github.com/alexrockhill/bids-specification
Brain Imaging Data Structure (BIDS) Specification
https://github.com/alexrockhill/anipose
🐜🐀🐒🚶 A toolkit for robust markerless 3D pose estimation
https://github.com/alexslemonade/scpca-docs
User information about ScPCA processing
https://github.com/alexslemonade/scpca-manuscript
The manuscript repository for the Single-cell Pediatric Cancer Atlas (ScPCA)
https://github.com/alexslemonade/ropenscpca
R package to support analysis in the OpenScPCA project
https://github.com/alexslemonade/reproducible-research
Repository for Reproducible Research Practices Training Workshop
https://github.com/alexslemonade/2024-august-training
Website for Data Lab "Introduction to RNA-Seq and Reproducible Research" Training, August 2024 at UMN
https://github.com/alexslemonade/spellcheck
This repository contains a Docker image with the R spelling package
https://github.com/alexslemonade/scpca-downstream-analyses
This repository is intended to store our pipeline for marker genes analysis.
https://github.com/alexslemonade/openpbta-analysis
The analysis repository for the Open Pediatric Brain Tumor Atlas Project
https://github.com/alexslemonade/identifier-refinery
Tools and assets for easy gene identifier conversion
https://github.com/alexstead/rfrontier
Stata package for robust stochastic frontier analysis
https://github.com/alexstormwood/oct24-gh-actions-demo
Messing around with GitHub Actions!
https://github.com/alexstormwood/oct24-t2w11-docker-basics
Basic NodeJS app to run in a Docker image.
https://github.com/alexstormwood/expressjs-class-oct-22
Basically the lesson plan for the MERN lessons I'm doing at Coder Academy STND-1 March 2022 cohort.
https://github.com/alexstormwood/expressjs-oct22-lesson-repo
Repo of the actual delivered content for STND-1 Feb 2022, in October 2022.
https://github.com/alexstormwood/jul24-t2w6-pokemon-hooks
Exploring ReactJS hooks.
https://github.com/alexstormwood/reactjs-docker-image-testo
Quick test of how to put a ReactJS static web app into a Docker image for use in Docker Compose files.
https://github.com/alexstormwood/jul24-t2w5-props-and-components
Props, child components, class components, class lifecycle methods.
https://github.com/alexstormwood/jul24-t2w4-pokemonteamapi
API to build and manage Pokemon teams.
https://github.com/alexstormwood/feb24-t3w6-react-events
Repo for button controls and other DOM events in React.
https://github.com/alexstormwood/feb24-t3w5-classes
Two separate apps, one for JS classes and one for React class components.
https://github.com/alexstormwood/gpa-helper
A CLI tool to help students calculate a GPA. Not thorough.
https://github.com/alexstormwood/feb24-t3w1-intro-to-js
Lesson content for T3W1 of FEB24.
https://github.com/alexstormwood/oct23-t3w10-expressintro
ExpressJS content for Tuesday and Thursday lesson of T3W10.
https://github.com/alexteghipco/gbat
VBM with correlation, partial correlation, distance correlation, partial distance correlation or mediation analysis
https://github.com/alextremo0205/empty-folder
Repository for the IITM workshop
https://github.com/alfa-group/bron
"Linking Threat Tactics, Techniques, and Patterns with Defensive Weaknesses, Vulnerabilities and Affected Platform Configurations for Cyber Hunting" by Erik Hemberg, Jonathan Kelly, Michal Shlapentokh-Rothman, Bryn Reinstadler, Katherine Xu, Nick Rutar, Una-May O'Reilly