PyDislocDyn: A Python code for calculating dislocation drag and other crystal properties
PyDislocDyn: A Python code for calculating dislocation drag and other crystal properties - Published in JOSS (2025)
Viable North Sea (ViNoS): A NetLogo Agent-based Model of German Small-scale Fisheries
Viable North Sea (ViNoS): A NetLogo Agent-based Model of German Small-scale Fisheries - Published in JOSS (2024)
SolarSpatialTools: A Python package for spatial solar energy analyses
SolarSpatialTools: A Python package for spatial solar energy analyses - Published in JOSS (2024)
hashin_shtrikman_mp: a package for the optimal design and discovery of multi-phase composite materials
hashin_shtrikman_mp: a package for the optimal design and discovery of multi-phase composite materials - Published in JOSS (2025)
<code>svZeroDSolver</code>: A modular package for lumped-parameter cardiovascular simulations
<code>svZeroDSolver</code>: A modular package for lumped-parameter cardiovascular simulations - Published in JOSS (2025)
torch_blue: A Flexible Python Package for Bayesian Neural Networks in PyTorch
torch_blue: A Flexible Python Package for Bayesian Neural Networks in PyTorch - Published in JOSS (2026)
tRIBS v5.2: A multi-resolution, parallel platform for tributary hydrology in forest applications
tRIBS v5.2: A multi-resolution, parallel platform for tributary hydrology in forest applications - Published in JOSS (2024)
tidyqwi: A Tidy Approach to Accessing The US Census Bureau's Quarterly Workforce Indicators
tidyqwi: A Tidy Approach to Accessing The US Census Bureau's Quarterly Workforce Indicators - Published in JOSS (2019)
BoxKit: A Python library to manage analysis of block-structured simulation datasets
BoxKit: A Python library to manage analysis of block-structured simulation datasets - Published in JOSS (2023)
tipr: An R package for sensitivity analyses for unmeasured confounders
tipr: An R package for sensitivity analyses for unmeasured confounders - Published in JOSS (2022)
TDLM: An R package for a systematic comparison of trip distribution laws and models
TDLM: An R package for a systematic comparison of trip distribution laws and models - Published in JOSS (2023)
HydrOptics.jl: A Julia package for calculating irradiance in the water body using Monte Carlo simulations
HydrOptics.jl: A Julia package for calculating irradiance in the water body using Monte Carlo simulations - Published in JOSS (2026)
floatCSEP: An application to deploy and conduct reproducible prospective earthquake forecasting experiments
floatCSEP: An application to deploy and conduct reproducible prospective earthquake forecasting experiments - Published in JOSS (2026)
MeDUSA: Taming your metabolic datasets using an R-package for data processing of Direct Infusion Untarged Single-cell Analysis
MeDUSA: Taming your metabolic datasets using an R-package for data processing of Direct Infusion Untarged Single-cell Analysis - Published in JOSS (2026)
PMMoTo: A Porous Media Morphology and Topology Toolkit
PMMoTo: A Porous Media Morphology and Topology Toolkit - Published in JOSS (2026)
pythonradex: a fast Python re-implementation of RADEX with extended functionality
pythonradex: a fast Python re-implementation of RADEX with extended functionality - Published in JOSS (2026)
corrselect: Fast and flexible predictor pruning for data analysis and modeling
corrselect: Fast and flexible predictor pruning for data analysis and modeling - Published in JOSS (2026)
stan-playground: Run Stan models directly in your browser
stan-playground: Run Stan models directly in your browser - Published in JOSS (2026)
widgyts: Custom Jupyter Widgets for Interactive Data Exploration with yt
widgyts: Custom Jupyter Widgets for Interactive Data Exploration with yt - Published in JOSS (2020)
Swiftest: An \textit{N}-body Integrator for Gravitational Systems
Swiftest: An \textit{N}-body Integrator for Gravitational Systems - Published in JOSS (2023)
kiwiPy: Robust, high-volume, messaging for big-data and computational science workflows
kiwiPy: Robust, high-volume, messaging for big-data and computational science workflows - Published in JOSS (2020)
Pyrimidine: An algebra-inspired Programming framework for evolutionary algorithms
Pyrimidine: An algebra-inspired Programming framework for evolutionary algorithms - Published in JOSS (2025)
Rclean: A Tool for Writing Cleaner, More Transparent Code
Rclean: A Tool for Writing Cleaner, More Transparent Code - Published in JOSS (2020)
pystiche: A Framework for Neural Style Transfer
pystiche: A Framework for Neural Style Transfer - Published in JOSS (2020)
JAX-bandflux: differentiable supernovae SALT modelling for cosmological analysis on GPUs
JAX-bandflux: differentiable supernovae SALT modelling for cosmological analysis on GPUs - Published in JOSS (2026)
MADSci: A modular Python-based framework to enable autonomous science
MADSci: A modular Python-based framework to enable autonomous science - Published in JOSS (2026)
DL_Track_US: a python package to analyse muscle ultrasonography images
DL_Track_US: a python package to analyse muscle ultrasonography images - Published in JOSS (2023)
Generating Visualizations Conversationally using Guided Autocomplete and LLMs
Generating Visualizations Conversationally using Guided Autocomplete and LLMs - Published in JOSS (2025)
Audiometry: A model-view-viewmodel (MVVM) application framework for hearing impairment diagnosis
Audiometry: A model-view-viewmodel (MVVM) application framework for hearing impairment diagnosis - Published in JOSS (2020)
ThRasE: A QGIS Plugin for Manual Post-Classification Correction and Quality Assurance of Thematic Maps
ThRasE: A QGIS Plugin for Manual Post-Classification Correction and Quality Assurance of Thematic Maps - Published in JOSS (2026)
visualCaseGen: An SMT-based Experiment Configurator for Community Earth System Model
visualCaseGen: An SMT-based Experiment Configurator for Community Earth System Model - Published in JOSS (2026)
MAFw: A Modular Analysis Framework for Streamlining and Optimizing Data Analysis Workflows
MAFw: A Modular Analysis Framework for Streamlining and Optimizing Data Analysis Workflows - Published in JOSS (2025)
FACILE-RS: archiving and long-term preservation of research software repositories made easy
FACILE-RS: archiving and long-term preservation of research software repositories made easy - Published in JOSS (2025)
BraWl: Simulating the thermodynamics and phase stability of multicomponent alloys using conventional and enhanced sampling techniques
BraWl: Simulating the thermodynamics and phase stability of multicomponent alloys using conventional and enhanced sampling techniques - Published in JOSS (2025)
GRAPE.jl: Gradient Ascent Pulse Engineering in Julia
GRAPE.jl: Gradient Ascent Pulse Engineering in Julia - Published in JOSS (2025)
State-Averaged Orbital-Optimized VQE: A quantum algorithm for the democratic description of ground and excited electronic states
State-Averaged Orbital-Optimized VQE: A quantum algorithm for the democratic description of ground and excited electronic states - Published in JOSS (2024)
Miop: a modular pipeline for 3D reconstruction from scanning electron microscope images
Miop: a modular pipeline for 3D reconstruction from scanning electron microscope images - Published in JOSS (2025)
cRacklet: a spectral boundary integral method library for interfacial rupture simulation
cRacklet: a spectral boundary integral method library for interfacial rupture simulation - Published in JOSS (2022)
libcdict: fast dictionaries in C
libcdict: fast dictionaries in C - Published in JOSS (2023)
dataquieR 2: An updated R package for FAIR data quality assessments in observational studies and electronic health record data
dataquieR 2: An updated R package for FAIR data quality assessments in observational studies and electronic health record data - Published in JOSS (2024)
RANO2.0-assist: A 3D Slicer Extension for (semi-)automatic Assessment of Response to Glioma Treatment
RANO2.0-assist: A 3D Slicer Extension for (semi-)automatic Assessment of Response to Glioma Treatment - Published in JOSS (2026)
solve_nivp: A Python toolkit for integrating nonsmooth dynamical systems
solve_nivp: A Python toolkit for integrating nonsmooth dynamical systems - Published in JOSS (2026)
Miop: a modular pipeline for 3D reconstruction from scanning electron microscope images
Miop: a modular pipeline for 3D reconstruction from scanning electron microscope images - Published in JOSS (2025)
pylevin: efficient numerical integration of integrals containing up to three Bessel functions
pylevin: efficient numerical integration of integrals containing up to three Bessel functions - Published in JOSS (2025)
msibi: Multistate Iterative Boltzmann Inversion
msibi: Multistate Iterative Boltzmann Inversion - Published in JOSS (2026)
<em>BatchPlanet</em>: Batch access and processing of PlanetScope imagery for spatiotemporal analysis in R
<em>BatchPlanet</em>: Batch access and processing of PlanetScope imagery for spatiotemporal analysis in R - Published in JOSS (2026)
reflectorch: a deep learning package for X-ray and neutron reflectometry
reflectorch: a deep learning package for X-ray and neutron reflectometry - Published in JOSS (2025)
h-NUMO: A high-performance discontinuous-Galerkin code for hydrostatic ocean modelling
h-NUMO: A high-performance discontinuous-Galerkin code for hydrostatic ocean modelling - Published in JOSS (2026)
fathon: A Python package for a fast computation of detrendend fluctuation analysis and related algorithms
fathon: A Python package for a fast computation of detrendend fluctuation analysis and related algorithms - Published in JOSS (2020)
INS_IEP: A MATLAB package for fitting peaks of Inelastic Neutron Scattering data in spin cluster systems
INS_IEP: A MATLAB package for fitting peaks of Inelastic Neutron Scattering data in spin cluster systems - Published in JOSS (2026)
IAMReX: an adaptive framework for the multiphase flow and fluid-particle interaction problems
IAMReX: an adaptive framework for the multiphase flow and fluid-particle interaction problems - Published in JOSS (2025)
xbitinfo: Compressing geospatial data based on information theory
xbitinfo: Compressing geospatial data based on information theory - Published in JOSS (2025)
Lexedata: A toolbox to edit CLDF lexical datasets
Lexedata: A toolbox to edit CLDF lexical datasets - Published in JOSS (2022)
LikelihoodProfiler.jl: Unified profile-likelihood workflows for identifiability and confidence intervals
LikelihoodProfiler.jl: Unified profile-likelihood workflows for identifiability and confidence intervals - Published in JOSS (2026)
The AutoActive Research Environment
The AutoActive Research Environment - Published in JOSS (2022)
DARTS: The Data Analysis Remote Treatment Service
DARTS: The Data Analysis Remote Treatment Service - Published in JOSS (2023)
Water Systems Integrated Modelling framework, WSIMOD: A Python package for integrated modelling of water quality and quantity across the water cycle
Water Systems Integrated Modelling framework, WSIMOD: A Python package for integrated modelling of water quality and quantity across the water cycle - Published in JOSS (2023)
aorsf: An R package for supervised learning using the oblique random survival forest
aorsf: An R package for supervised learning using the oblique random survival forest - Published in JOSS (2022)
TriP: A Python package for the kinematic modeling of serial-parallel hybrid robots
TriP: A Python package for the kinematic modeling of serial-parallel hybrid robots - Published in JOSS (2022)
pyCLINE: A Python package using the CLINE method for discovery of nullcline structures in oscillatory dynamics
pyCLINE: A Python package using the CLINE method for discovery of nullcline structures in oscillatory dynamics - Published in JOSS (2025)
Fast k-medoids Clustering in Rust and Python
Fast k-medoids Clustering in Rust and Python - Published in JOSS (2022)
LTRpred: de novo annotation of intact retrotransposons
LTRpred: de novo annotation of intact retrotransposons - Published in JOSS (2020)
Hytool: an open source matlab toolbox for the interpretation of hydraulic tests using analytical solutions
Hytool: an open source matlab toolbox for the interpretation of hydraulic tests using analytical solutions - Published in JOSS (2017)
BisPy: Bisimulation in Python
BisPy: Bisimulation in Python - Published in JOSS (2021)
ResumableFunctions: C# sharp style generators for Julia.
ResumableFunctions: C# sharp style generators for Julia. - Published in JOSS (2017)
ECNet: Large scale machine learning projects for fuel property prediction
ECNet: Large scale machine learning projects for fuel property prediction - Published in JOSS (2017)
The psyplot interactive visualization framework
The psyplot interactive visualization framework - Published in JOSS (2017)
Pyinterpolate: Spatial interpolation in Python for point measurements and aggregated datasets
Pyinterpolate: Spatial interpolation in Python for point measurements and aggregated datasets - Published in JOSS (2022)
RefManageR: Import and Manage BibTeX and BibLaTeX References in R
RefManageR: Import and Manage BibTeX and BibLaTeX References in R - Published in JOSS (2017)
genomepy: download genomes the easy way
genomepy: download genomes the easy way - Published in JOSS (2017)
dKMC: Delocalised kinetic Monte Carlo for simulating fundamental transport processes involving partially delocalised carriers in disordered materials
dKMC: Delocalised kinetic Monte Carlo for simulating fundamental transport processes involving partially delocalised carriers in disordered materials - Published in JOSS (2025)
rtimicropem: an R package supporting the analysis of RTI MicroPEM output files
rtimicropem: an R package supporting the analysis of RTI MicroPEM output files - Published in JOSS (2017)
Surfaxe: Systematic surface calculations
Surfaxe: Systematic surface calculations - Published in JOSS (2021)
plutus: An R package to calculate electricity investments and stranded assets from the Global Change Analysis Model (GCAM)
plutus: An R package to calculate electricity investments and stranded assets from the Global Change Analysis Model (GCAM) - Published in JOSS (2021)
Virtual Bumblebees Artificial Life Simulation
Virtual Bumblebees Artificial Life Simulation - Published in JOSS (2017)
GAIO.jl - A concise Julia package for the global analysis of dynamical systems
GAIO.jl - A concise Julia package for the global analysis of dynamical systems - Published in JOSS (2025)
AgentPy: A package for agent-based modeling in Python
AgentPy: A package for agent-based modeling in Python - Published in JOSS (2021)
Ramble: Parser Combinator for R
Ramble: Parser Combinator for R - Published in JOSS (2017)
Weave.jl: Scientific Reports Using Julia
Weave.jl: Scientific Reports Using Julia - Published in JOSS (2017)
MNE-RSA: Representational Similarity Analysis on EEG, MEG and fMRI data
MNE-RSA: Representational Similarity Analysis on EEG, MEG and fMRI data - Published in JOSS (2025)
lawn: An R client for the Turf Javascript Library for Geospatial Analysis
lawn: An R client for the Turf Javascript Library for Geospatial Analysis - Published in JOSS (2017)
pyuvdata: an interface for astronomical interferometeric datasets in python
pyuvdata: an interface for astronomical interferometeric datasets in python - Published in JOSS (2017)
KraljicMatrix: An R package for implementing the Kraljic Matrix to strategically analyze a firm’s purchasing portfolio
KraljicMatrix: An R package for implementing the Kraljic Matrix to strategically analyze a firm’s purchasing portfolio - Published in JOSS (2017)
WatchMe: Software for Reproducible Monitoring and Data Collection
WatchMe: Software for Reproducible Monitoring and Data Collection - Published in JOSS (2019)
BayesPostEst: An R Package to Generate Postestimation Quantities for Bayesian MCMC Estimation
BayesPostEst: An R Package to Generate Postestimation Quantities for Bayesian MCMC Estimation - Published in JOSS (2019)
Metatheory.jl: Fast and Elegant Algebraic Computation in Julia with Extensible Equality Saturation
Metatheory.jl: Fast and Elegant Algebraic Computation in Julia with Extensible Equality Saturation - Published in JOSS (2021)
hddtools: Hydrological Data Discovery Tools
hddtools: Hydrological Data Discovery Tools - Published in JOSS (2017)
ddop: A python package for data-driven operations management
ddop: A python package for data-driven operations management - Published in JOSS (2021)
Leafmap: A Python package for interactive mapping and geospatial analysis with minimal coding in a Jupyter environment
Leafmap: A Python package for interactive mapping and geospatial analysis with minimal coding in a Jupyter environment - Published in JOSS (2021)
Bedtoolsr: An R package for genomic data analysis and manipulation
Bedtoolsr: An R package for genomic data analysis and manipulation - Published in JOSS (2019)
pythainer: composable and reusable Docker builders and runners for reproducible research
pythainer: composable and reusable Docker builders and runners for reproducible research - Published in JOSS (2026)
DDC: The Discrete Domain Computation library
DDC: The Discrete Domain Computation library - Published in JOSS (2025)
emg3d: A multigrid solver for 3D electromagnetic diffusion
emg3d: A multigrid solver for 3D electromagnetic diffusion - Published in JOSS (2019)
assembly-theory: Open, Reproducible Calculation of Assembly Indices
assembly-theory: Open, Reproducible Calculation of Assembly Indices - Published in JOSS (2026)
ReciPies: A Lightweight Data Transformation Pipeline for Reproducible ML
ReciPies: A Lightweight Data Transformation Pipeline for Reproducible ML - Published in JOSS (2026)
Blini: lightweight nucleotide sequence search and dereplication
Blini: lightweight nucleotide sequence search and dereplication - Published in JOSS (2026)
GPJax: A Gaussian Process Framework in JAX
GPJax: A Gaussian Process Framework in JAX - Published in JOSS (2022)
AMaze: a benchmark generator for sighted maze-navigating agents
AMaze: a benchmark generator for sighted maze-navigating agents - Published in JOSS (2025)
SODAR Core: a Django-based framework for scientific data management and analysis web apps
SODAR Core: a Django-based framework for scientific data management and analysis web apps - Published in JOSS (2020)