GitHub

https://github.com

Updated 10 months ago

science-impacts-industry • Science 44%

Science Impacts Industry: Investigating the Relationship Between Scientific Advancements and Industrial Funding

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3dobjectreconstruction • Science 44%

3D Object Reconstruction project is a workflow that takes a set of stereo images and camera info and outputs a textured mesh (i.e., .OBJ file). The purpose is to translate physical items into the digital world in a photorealistic way

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privategpt • Science 44%

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parsnips • Science 44%

Generate, search, and cite SWHIDs for Python code fragments like classes, functions, and expressions.

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domino • Science 62%

A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware that an improved package, dominoSignal, is available.

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test • Science 52%

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cloudcovfix.jl • Science 54%

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ananta-theory • Science 67%

A symbolic and falsifiable cosmology exploring time emergence, coherence, and fractal intelligence.

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gutanalysistoolbox • Science 49%

Analysis and characterisation of cells within the gut wall using deep learning models. The current focus is on studying enteric neurons and enteric glia.

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nestedsamplers.jl • Science 75%

Implementations of single and multi-ellipsoid nested sampling

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rdf-stax.github.io • Science 49%

Main repository of the RDF Stream Taxonomy (RDF-STaX)

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popglen • Science 54%

Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using ANGSD and related softwares. Flexible to datasets that combine high/low coverage and historical/fresh samples.

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plurals • Science 67%

Plurals: A System for Guiding LLMs Via Simulated Social Ensembles

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nf-core-rnaseqdge • Science 54%

example nextflow pipeline with nf-core modules: RNA-seq and differential gene expression analysis

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mevd-r • Science 57%

Metastatistical Extreme Value Distribution Regional Framework

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protein-detective • Science 67%

Python package to detect proteins in EM density maps.

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merge_open_hospital_data • Science 67%

A repository to keep track of the merging of open health facility data for the afrimapr and covidza projects

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class-info • Science 44%

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scientific_research_scraper • Science 54%

[Python] Scraping tool for multiple databases using api's and ChromeDriver.

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kepingbi.github.io • Science 44%

Keping's personal website

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mrmagpie • Science 67%

The package provides cellular magpie related data via the madrat framework.

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INTR_AI • Science 44%

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sus-analysis-toolkit • Science 67%

A web-based analysis toolkit for the System Usability Scale providing calculation, plotting, interpretation and contextualization utility.

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mdance • Science 67%

MDANCE is a flexible n-ary clustering package for all applications.

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sparseposer • Science 54%

Official Code for ACM Transactions on Graphics (TOG) paper "SparsePoser: Real-time Full-body Motion Reconstruction from Sparse Data"

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fruit-recognition • Science 44%

Fruit Recognition

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hmm_kunitz_domain • Science 44%

Hidden Markov Model-based classification and structural validation of Kunitz-type protein domains. Includes sequence alignment, model training, validation on curated datasets, and structural quality assessment using PDBeFold and RMSD/Q-score analysis. Final project for the Laboratory of Bioinformatics 1 course at the University of Bologna.

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illuseqsweep • Science 44%

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riffle • Science 54%

Non-parametric randomized differential expression test for sparse data

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minimal_bug • Science 44%

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bit_vector • Science 67%

Fast and highly tuned bit vector implementation including space efficient rank and select support having only 3.51% space overhead.

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byteir • Science 44%

A model compilation solution for various hardware

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adiar • Science 67%

An I/O-efficient implementation of (Binary) Decision Diagrams

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braincoder • Science 57%

Encoding models for fMRI implemented in tensorflow

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fl-demonstrator-mnist • Science 75%

MNIST example client of the federated learning platform

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ddd • Science 44%

sss

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digitising-museum-specimens-tests • Science 52%

A set of scripts to test connectivity and speed to Azure storage

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moving-robots • Science 54%

multi agent avoidance using VMAS

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light-quant • Science 44%

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nix • Science 54%

Nix, the purely functional package manager

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zac-demo • Science 44%

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bambu-nf • Science 57%

nextflow pipeline to run bambu for long-read transcript assembly

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simreg • Science 44%

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groeblacherlabcode • Science 44%

Public code of the Groeblacher Lab to control lab instruments.

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uca • Science 67%

Replication package for the Case Study on Use Case Adoption

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snakemake-novice-lattice • Science 44%

Introduction to Snakemake for Lattice Quantum Field Theory

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mie • Science 54%

Mie theory for electromagnetic scattering by spherical objects

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person-data-analysis • Science 44%

This repository contains a Jupyter notebook and related helper scripts to analyze authority data of the MetaBelgica partner institutions. It is related to deliverable Deliverable 1.2.2 - Quality requirements and categories of Belgian entities. MetaBelgica. https://doi.org/10.5281/zenodo.14974410

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optobio • Science 44%

This is a general FIJI/python code repository of Optobio team

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mer-factory • Science 67%

Workflow Agent for constructing Affect Computing (e.g., Multimodal Emotion Recognition and Reasoning, Sentiment Analysis) datasets.

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erd • Science 54%

Overcoming Catastrophic Forgetting in Incremental Object Detection via Elastic Response Distillation

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hybrider • Science 54%

Pipeline for population genetics analysis of putatively hybrid species: Genetic structure characterization and signal SNPs selection

Updated 10 months ago

dendro_r • Science 44%

Small repository that lists R packages used in dendrochronology or tree-ring research.

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quarto-external • Science 44%

Quarto extension to include content or partial content from external file.

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contentgen • Science 44%

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yse_pz • Science 67%

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gridscore-next-client • Science 57%

GridScore is a phenotyping application that can be used to score trait data for plants or more generically any data about a subject for certain variables.

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vp_extraction • Science 52%

Repo for the Vertical Profile generation code, used in the DRUID, BioDar and PESTdar projects

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huminex • Science 44%

Source code for Huminex website

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whisper-small-indian-accent • Science 44%

A fine-tuned Whisper Small model for improved speech recognition of Indian English accents.

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@stdlib/random-strided-beta • Science 44%

Fill a strided array with pseudorandom numbers drawn from a beta distribution.

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awesome-virtual-try-off • Science 54%

A curated list of awesome research papers, projects, code, dataset, workshops etc. related to virtual try-off.

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yolov11-rgbt • Science 67%

YOLOv11-RGBT: Towards a Comprehensive Single-Stage Multispectral Object Detection Framework(Supports RGBT detection for all YOLO series from YOLOv3 to YOLOv13, as well as RTDETR. 【Ultralytics YOLOv3-YOLOv13】

Scientific Software
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Ginkgo — Peer-reviewed • Science 100%

Ginkgo: A high performance numerical linear algebra library - Published in JOSS (2020)

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istsos4 • Science 44%

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curationpretext • Science 65%

A Nextflow DSL2 pipeline for pretext generation in curation