GitHub
qst
A public Python package to perform quantum state tomography through maximum likelihood estmation
urll-specification
The specification for the URLL file, a list of URLs in a single file.
https://github.com/fgasdia/possible-julia-bugs
Scratch repo for demonstrating possible bugs/issues
opensourcedmacromodels
A best-efforts collection of open-sourced macroeconomic models run by central banks and other official sector agencies (ie, ministries of economy)
biobb_wf_protein-complex_md_setup
This tutorial aims to illustrate the process of setting up a simulation system containing a protein in complex with a ligand, step by step, using the BioExcel Building Blocks library (biobb).
mmcv-full-1.7.1-torch-2
Update setup.py for mmcv-full 1.7.1 to match torch >=2.
csv2ical
A CLI tool that converts a CSV file with event details into an iCalendar ICS file. The ICS file can then be imported into apps like Google Calendar, Microsoft Outlook, Apple macOS Calendar and etc.
aramis-data-exporter
The data exporter is a third-party Python package that enables the export of 3D digital image correlation (DIC) data from a Zeiss GOM Inspect/ARAMIS Professional project in a neutral and human-readable ASCII data format
uc-cwr
The code base for the Crop-Wild-Relative (CWR) Biodiversity Digital Twin use-case led by UiO
deepseek-ai
DeepSeek AI | Mixture-of-Experts Vision-Language Models for Advanced Multimodal Understanding
biobb_wf_godmd
This tutorial aims to illustrate the process of computing a conformational transition between two known structural conformations of a protein, step by step, using the BioExcel Building Blocks library (biobb).
https://github.com/fgasdia/starmatch.jl
An implementation of the Rotation Invariant Vector Frame star matching algorithm.
dirschema
Spec and validator for directories, files and metadata based on JSON Schema and regexes.
https://github.com/fgasdia/quarticsolver
Find roots of 4th order polynomials (quartics)
array-base-unary5d-by
Apply a unary function to each element retrieved from a five-dimensional nested input array according to a callback function and assign results to elements in a five-dimensional nested output array.
biobb_wf_ligand_parameterization
This tutorial aims to illustrate the process of ligand parameterization for a small molecule, step by step, using the BioExcel Building Blocks library (biobb).
biobb_wf_flexdyn
This tutorial aims to illustrate the process of generating protein conformational ensembles from 3D structures and analysing its molecular flexibility, step by step, using the BioExcel Building Blocks library (biobb).
gradus.jl
Extensible spacetime agnostic general relativistic ray-tracing (GRRT).
biobb_wf_dna_helparms
This tutorial aims to illustrate the process of extracting structural and dynamical properties from a DNA MD trajectory helical parameters, step by step, using the BioExcel Building Blocks library (biobb).
https://github.com/fgasdia/interp.jl
Cubic (and PCHIP) interpolation with irregularly spaced points.
motionaura-iclr-2025
Official source code of "MotionAura: Generating High-Quality and Motion Consistent Videos using Discrete Diffusion", published in ICLR 2025
2025-biodata-wealth-inequality
Code to create figures showing wealth inequality of biological sequence data in the Protein Data Bank (PDB), UniProtKB/SwissProt, UniProtKB/TREMBL (AlphaFoldDB), and predicted number of proteins on Earth
scantec
Sistema Comunitário de Avaliação de modelos Numéricos de Tempo e Clima (SCANTEC)
data_steward_assignment
Repository accompanying the task given for the Data Steward position interview
yemama-app
companion app for Drexl et al. (in press) Readdressing missing data ... JMIR doi: 10.2196/65710
icgc-argo-mutational-signatures
ICGC ARGO Mutational Signatures Workflow Packages
https://github.com/fgasdia/satellitetoolbox.jl
A toolbox for satellite analysis written in julia language.
chartextractor
ChartExtractor uses computer vision to convert images of paper charts to digital data.
biobb_wf_amber
This tutorials aim to illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb) wrapping the Ambertools MD package.
iridanextexample2
An example pipeline for running on IRIDA-Next with nf-schema
genealignment
An NF-core pipeline to alignment genesets against a given reference genome.
mrisharingguide
We developed a guide for researchers in the Netherlands who want to share brain MRI data to help them get started.
stoix
🏛️A research-friendly codebase for fast experimentation of single-agent reinforcement learning in JAX • End-to-End JAX RL
underrepresented-poetry
This collection features 105 selected poetry collections by underrepresented groups of American poets.
pco-si-2024-1-p3-poo-tpfinal-grupo10
pco-si-2024-1-p3-poo-tpfinal-grupo10 created by GitHub Classroom
block_extractor
A proof of concept TypeScript program that reads a Markdown file and extract blocks of code delimited with "```".
rhud
A R interface for the US Department of Housing and Urban Development APIs
https://github.com/fgasdia/polynomialroots.jl
Fast complex polynomial root finder, with support for arbitrary precision calculations
capemon-hook-generator
CAPEv2 (capemon) hook skeleton generator (hookdefs) for your malware analysis needs.
biobb_wf_cmip
This tutorial aims to illustrate the process of computing classical molecular interaction potentials from protein structures, step by step, using the BioExcel Building Blocks library (biobb).
galacticedtools
R-based tools for visualizing data, creating puzzles, and other digital gizmos for use by K-16 educators. Much of this code was developed for Galactic Polymath lessons. Instead of keeping it to ourselves, we want to share it with you.
universal-delayed-consciousness
A predictive, substrate-agnostic theory of consciousness proposing that awareness arises from delayed sensory processing, memory integration, and recursive modeling. Applicable to both biological and artificial systems. Authored by Joshua B. Hinkson, MA · Published 2025 · Public preprint available on Academia.edu.
pmv-ads-2023-2-e2-proj-int-t11-pmv-ads-2023-2-e2-proj-int-t11-grupo3
pmv-ads-2023-2-e2-proj-int-t11-pmv-ads-2023-2-e2-proj-int-t11-grupo3 created by GitHub Classroom
pmv-ads-2024-1-e1-proj-web-t09-barbearia
pmv-ads-2024-1-e1-proj-web-t09-barbearia created by GitHub Classroom
api-fryntiz
Proyecto de API con información en tiempo real sobre mis páginas web. Mirro de https://gitlab.com/raupulus/api-fryntiz
array-base-cuevery-by-right
Cumulatively test whether every array element in a provided array passes a test implemented by a predicate function, while iterating from right-to-left.
extractor
Extractor extracts and analyzed information from scientific articles in PDF format. It runs an script that performs various tasks to facilitate the analysis of multiple articles located in an specific directory.
constants-float32-max-base2-exponent-subnormal
The maximum biased base 2 exponent for a subnormal single-precision floating-point number.
constants-float32-sqrt-three
Square root of 3 as a single-precision floating-point number.
zoobot-arch-comp
A Comparison of Deep Learning Architectures for Optical Galaxy Morphology Classification