https://github.com/awesomecosmos/aayushi-verma-cv • Science 49%

Aayushi Verma's Curriculum Vitae.

https://github.com/baaihealth/opencomplex2 • Science 49%

initial repo

https://github.com/baltic-coastal-monitoring-team/geopoint • Science 67%

GeoPOINT – Synthetic Point Generator for Geospatial Applications

https://github.com/bartongroup/ligysis-web • Science 57%

https://github.com/bayer-group/unidino • Science 49%

https://github.com/bblodfon/pdac-efs-bench2024 • Science 49%

Feature Selection benchmark and analysis on multi-omics PDAC datasets

https://github.com/beiko-lab/beiko-lab.github.io • Science 49%

https://github.com/benny0323/deep-learning-based-mia-tasks • Science 49%

⭐[A Deep Survey] Paper List For Metal Artifact Reduction including traditional and deepl leanring based methods. ℱℯℯ𝓁 𝒻𝓇ℯℯ to contribute!

https://github.com/berenslab/llm-excess-vocab • Science 49%

Delving into LLM-assisted writing in biomedical publications through excess vocabulary

subjectivescalesmodels.jl • Science 44%

A Julia package for Beta-like regression models useful for subjective scales data (Likert scales, analog scales, ...)

https://github.com/bin-cao/shapev • Science 49%

[JMI 2022 | Aggregate 2025] A package for searching equivalent values based on joined SHAP values

https://github.com/bio-rsg/oceancolour • Science 49%

Package of custom functions for remote sensing data analysis

https://github.com/bioconductor/bioconductor-training • Science 49%

Bioconductor teaching and education committee

https://github.com/biodataanalysisgroup/virtual-tutorial-perturbation-modelling • Science 49%

https://github.com/biodt/uc-grassland • Science 49%

pDT grassland main repository

https://github.com/bioinfomachinelearning/multicom4 • Science 49%

The MULTICOM4 protein structure prediction system developed by the Bioinformatics and Machine Learning Lab at the University of Missouri - Columbia

https://github.com/biolink/resource-ingest-guide-schema • Science 44%

A LinkML schema for describing the scope, rationale, and modeling approach for ingesting content from a single source.

https://github.com/biont-training/hpc-workflows-en • Science 44%

https://github.com/bioscan-ml/barcodebert • Science 49%

A pre-trained representation from a transformers model for inference on insect DNA barcoding data.

https://github.com/bodenmillergroup/imcdataanalysis • Science 49%

R based workflow for multiplexed imaging data

https://github.com/boothgroup/vayesta • Science 49%

A Python package for wave function-based quantum embedding

https://github.com/bootphon/speech-map • Science 49%

Mean Average Precision over words or n-grams with speech features

https://github.com/bozenne/article-netbenefit-correction • Science 49%

Code and software for the article "Correcting the bias of the net benefit estimator due to right-censored observations" published in biometrical (link: https://doi.org/10.1002/bimj.202000001 ).

csnet • Science 67%

https://github.com/brainets/hosi_infogain • Science 49%

Script for "Higher-order and distributed synergistic functional interactions encode information gain in goal-directed learning"

https://github.com/brainglobe/brainglobe-template-builder • Science 49%

Build unbiased anatomical templates from individual images

desirna • Science 67%

State of the art software for RNA sequence design. The first to solve the Eterna benchmark!

https://github.com/broadinstitute/profiling-resistance-mechanisms • Science 57%

Predicting pharmacodynamic responses to cancer drugs using cell morphology

https://github.com/broadinstitute/strainge • Science 57%

strain-level analysis tools

https://github.com/broadinstitute/pbs-analysis • Science 57%

Scripts for analyzing ChIP-seq and related datatypes with binning and PBS

https://github.com/broadinstitute/dino4cells_analysis • Science 57%

https://github.com/brugr9/uepluginvolumecreator • Science 49%

Unreal Engine Plugin: Volume Creator – Documentation

https://github.com/bueler/glacier-fe-estimate • Science 46%

extend the Falk technique to Stokes glacier models of surface evolution

https://github.com/cafferychen777/cafferychen777 • Science 49%

https://github.com/cair/tsetlinmachine • Science 49%

Code and datasets for the Tsetlin Machine

https://github.com/caltechlibrary/2020-05-11-swc-online • Science 52%

May 2020 Software Carpentry Workshop

https://github.com/camilogarciabotero/biovossencoder.jl • Science 46%

A small Julia package to represent BioSequences as a Voss matrix

https://github.com/catalystneuro/surmeier-lab-to-nwb • Science 49%

https://github.com/cbg-ethz/influenza_wastewater_analysis • Science 57%

https://github.com/cdcgov/dengue_epidemic_thresholds • Science 57%

https://github.com/cdcgov/irma • Science 57%

IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.

https://github.com/ceed/nekrs • Science 49%

Mirror of NekRS - GPU-oriented version of Nek5000. Please use the official repository, https://github.com/Nek5000/nekRS, to create issues and pull requests.

https://github.com/centre-for-humanities-computing/llm-tweet-classification • Science 49%

Classifying tweets with large language models with zero- and few-shot learning.

https://github.com/cgeoga/vecchia.jl • Science 49%

Vecchia approximations for Gaussian log-likelihoods

https://github.com/ch-earth/openfews • Science 49%

Open and Shareable Delft-FEWS configuration for connecting the Next Generation of Forecasting Tools

https://github.com/chakravala/staticvectors.jl • Science 44%

Statically sized tuple vectors for Julia

https://github.com/chenzhaiyu/ahninpainter • Science 49%

A toolset for AHN inpainting

https://github.com/choropent/3dseg • Science 49%

https://github.com/cidgoh/nf-ncov-voc • Science 49%

A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 or Mpox genomes. Workflow is developed in collaboration with VIRUS-MVP (https://github.com/cidgoh/VIRUS-MVP) which can be used to visualize the mutation profiles and functional annotations.

https://github.com/climate-service-center/dacstore • Science 49%

Acceptance analysis DACStorE

https://github.com/climatecompatiblegrowth/geo-x-data-prep • Science 49%

Spatial data preparation tools for GeoH2 users.

https://github.com/clir-abvi-portal/clir-abvi-portal-aaslh • Science 44%

https://github.com/cmendl/rqcopt_hpc • Science 49%

HPC implementation of Riemannian quantum circuit optimization

https://github.com/coderefinery/testing • Science 57%

Automated testing - Preventing yourself and others from breaking your functioning code

https://github.com/coin-or/symphony • Science 49%

SYMPHONY is an open-source solver, callable library, and development framework for mixed-integer linear programs (MILPs) written in C with a number of unique features

https://github.com/comp-physics/meshfreetrixi.jl • Science 49%

Meshfree extension to Trixi using RBF-based numerics

https://github.com/compiler-campusminden/cpl-vorlesung-master-w25 • Science 44%

Lecture "Concepts of Programming Languages" (M.Sc.) (Winter 2025/26)

https://github.com/computational-biology-aachen/synechocystis-photosynthesis-2024 • Science 49%

A mathematical model of photosynthetic electron transport in Synechocystis sp. PCC 6803

https://github.com/conect2ai/sbai2025-tensorflores • Science 49%

https://github.com/corybrunson/ordr • Science 49%

manage ordinations and render biplots in a tidyverse workflow

https://github.com/cosbidev/ostransformer • Science 49%

Official implementation for the paper ``A Deep Learning Approach for Overall Survival Prediction in Lung Cancer with Missing Values´´

https://github.com/cosmo-pop/flowfusion • Science 54%

Generative modelling using diffusion models and flow-matching

https://github.com/cpanse/fgczqcms • Science 46%

https://github.com/crsu-apps/popviz • Science 49%

A visualisation package to show absolute effects as a proportion of people

https://github.com/csinva/clinical-rule-development • Science 49%

Building and vetting clinical decision rules.

https://github.com/cthoyt/wikidata-client • Science 54%

https://github.com/ctu-vras/monoforce • Science 49%

[IROS 2024] [ICML 2024 Workshop Differentiable Almost Everything] MonoForce: Learnable Image-conditioned Physics Engine

number-float64-base-assert-is-same-value-zero • Science 44%

Test if two double-precision floating-point numbers are the same value.

assignment1 • Science 44%

https://github.com/cwwhitney/urban_school_gardens • Science 49%

Decision model on investment in urban school gardens for food environment outcomes (Hanoi, Vietnam case)

https://github.com/cyclotronresearchcentre/bidsme_containerisation • Science 44%

Bringing BIDSme into a container, then NeuroDesk

https://github.com/danielathome19/engram-neural-network • Science 49%

tensorflow-engram: A Python package for Engram Neural Networks, adding biologically-inspired Hebbian memory and engram layers to TensorFlow/Keras models, supporting memory traces, plasticity, attention, and sparsity for neural sequence learning.

https://github.com/danielenricocahall/danielenricocahall • Science 49%

https://github.com/danielenricocahall/keras-unet • Science 49%

Implementation of U-Net in Keras

https://github.com/data-science-in-mechanical-engineering/mixed_precision_for_jax • Science 57%

A repository for Mixed Precision Training in JAX based on Equinox.

https://github.com/dataunitylab/jsonoid-discovery • Science 57%

Distributed JSON schema discovery

Graphem - JAX: Node Influence Maximization via Geometric Embeddings • Science 98%

Graphem - JAX: Node Influence Maximization via Geometric Embeddings - Published in JOSS (2025)

Pi4Micronaut: A Java Library for IoT Research Instruments on Raspberry Pi • Science 93%

Pi4Micronaut: A Java Library for IoT Research Instruments on Raspberry Pi - Published in JOSS (2025)

@stdlib/array-empty-like • Science 44%

Create an uninitialized array having the same length and data type as a provided array.

qsort R package — Peer-reviewed • Science 93%

qsort R package: A New Tool for Scoring Q-sort Data - Published in JOSS (2018)

complexity-in-complexity • Science 54%

Code for "Complexity in Complexity: Understanding Visual Complexity Through Structure, Color, and Surprise". CogSci, 2025 & ICLR Re-Align Workshop, 2025.

OrbDot — Peer-reviewed • Science 93%

OrbDot: A Python package for studying the secular evolution of exoplanet orbits - Published in JOSS (2025)

ginjax — Peer-reviewed • Science 93%

ginjax: E(d)-Equivariant CNN for Tensor Images - Published in JOSS (2025)

GraphCalc — Peer-reviewed • Science 93%

GraphCalc: A Python Package for Computing Graph Invariants in Automated Conjecturing Systems - Published in JOSS (2025)

scmorph — Peer-reviewed • Science 98%

scmorph: a Python package for analysing single-cell morphological profiles - Published in JOSS (2025)

slap2-utils — Peer-reviewed • Science 93%

slap2-utils: Tools for Processing SLAP2 Data - Published in JOSS (2025)

CaNS-Fizzy — Peer-reviewed • Science 93%

CaNS-Fizzy: A GPU-accelerated finite difference solver for turbulent two-phase flows - Published in JOSS (2025)

TMLE.jl — Peer-reviewed • Science 98%

TMLE.jl: Targeted Minimum Loss-Based Estimation in Julia - Published in JOSS (2025)

MCSimMod — Peer-reviewed • Science 93%

MCSimMod: An R Package for Working with Ordinary Differential Equation Models Encoded in the MCSim Model Specification Language - Published in JOSS (2025)

Snowdrop — Peer-reviewed • Science 93%

Snowdrop: Python Package for DSGE Modeling - Published in JOSS (2025)

smolyax — Peer-reviewed • Science 98%

smolyax: a high-performance implementation of the Smolyak interpolation operator in JAX - Published in JOSS (2025)

Parallel-CDM — Peer-reviewed • Science 98%

Parallel-CDM: Parallel Implementation of Continuum Damage Mechanics Simulations using FEM and MATLAB - Published in JOSS (2025)

ChemInformant — Peer-reviewed • Science 98%

ChemInformant: A Robust and Workflow-Centric Python Client for High-Throughput PubChem Access - Published in JOSS (2025)

SDA — Peer-reviewed • Science 93%

SDA: a symbolic differential algebra package in C++ - Published in JOSS (2025)

voice — Peer-reviewed • Science 93%

voice: A Comprehensive R Package for Audio Analysis - Published in JOSS (2025)

BayesReconPy — Peer-reviewed • Science 93%

BayesReconPy: A Python package for forecast reconciliation - Published in JOSS (2025)

SOAP — Peer-reviewed • Science 93%

SOAP: A Python Package for Calculating the Properties of Galaxies and Halos Formed in Cosmological Simulations - Published in JOSS (2025)

PolytopeWalk — Peer-reviewed • Science 93%

PolytopeWalk: Sparse MCMC Sampling over Polytopes - Published in JOSS (2025)

The Population Synthesis Toolkit (PST) Python Library — Peer-reviewed • Science 98%

The Population Synthesis Toolkit (PST) Python Library - Published in JOSS (2025)

PyStarshade — Peer-reviewed • Science 93%

PyStarshade: Simulating High-Contrast Imaging of Exoplanets with Starshades - Published in JOSS (2025)