GitHub
charmmguiauto
CharmmGuiAuto is a tool designed to streamline and automate interactions with CHARMM-GUI, the web-based graphical user interface for CHARMM (Chemistry at HARvard Macromolecular Mechanics). This tool simplifies the process of preparing input files for molecular dynamics simulations.
8
Create an open database for the thermodynamics of enzyme-catalyzed reactions (and other metabolism relevant thermodynamic data)
strip-r-cnn
Offical implementation of "Strip R-CNN: Large Strip Convolution for Remote Sensing Object Detection"
stats-strided-dnanmskrange
Calculate the range of a double-precision floating-point strided array according to a mask, ignoring NaN values.
burgers-vector-calculator
Program that computes Burgers vectors from elastic strain and lattice rotation data
intro-bayesian-statistics-training
SIB course on bayesian statistics with applications using Rstan
anomalydetector
Intelligent Surveillance System Using Motion Anomaly Detection
stats-strided-wasm-dmeanwd
Calculate the arithmetic mean of a double-precision floating-point strided array using Welford's algorithm.
installkernel-wsl
Script and installkernel hook to copy Linux kernel to the host system and update .wslconfig.
fair-convergence-matrix
Basic code to create FAIR convergence matrix from nanodash nanopublications
sequencecomposition
Nextflow DSL2 pipeline to extract statistics from a genome about its sequence composition
neuco-bench
Welcome to NeuCo-Bench, a benchmarking framework for evaluating compressed embeddings on downstream tasks.
pmv-si-2023-2-pe1-t2-house-hero
pmv-si-2023-2-pe1-t2-house-hero created by GitHub Classroom
https://github.com/ivorytower152/denoising-diffusion-pytorch
Implementation of Denoising Diffusion Probabilistic Model in Pytorch
eista
A single-cell spatial transcriptomics pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.
lkfmixer
LKFMixer: Exploring Large Kernel Feature For Efficient Image Super-Resolution
https://github.com/boyle-lab/gpatch-manuscript
Data retrieval and Analysis steps for the GPatch manuscript.
presentation.template
This repository contains latex templates for NumPEx documents
neuropyxels
NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.
ssp-mmc
A Stochastic Shortest Path Algorithm for Optimizing Spaced Repetition Scheduling
recoll
Recoll is a desktop full-text search tool (forked from the original at framagit)
https://github.com/ivorytower152/mmpose
OpenMMLab Pose Estimation Toolbox and Benchmark.
aises-virtue-ethics
Teach virtue ethics to AI, an alternative approach to ConstitutionalAI. Final project for the AISES course, fall 2025
repilot
Repilot, a patch generation tool introduced in the ESEC/FSE'23 paper "Copiloting the Copilots: Fusing Large Language Models with Completion Engines for Automated Program Repair"
hermes_metadata_lesson
Data and Metadata in the Humanities: Structures, Schemas, and Standards
pyigmap
[UNDER DEVELOPMENT] Pipeline for mapping and annotating T- and B-cell receptor gene rearrangement sequences
libs.tn
Automatische data extractie en dataverwerking voor de TN studie aan de HHS
bioc-rnaseq
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
hermes_stat_inf_data_vis
Statistical inference and data visualization for the humanities
la-rape-ia
Markov 2000 est une râpe à fromage modifié pour "rapper des mots" grâce au modèle de Markov.
judy
Judy is a python library and framework to evaluate the text-generation capabilities of Large Language Models (LLM) using a Judge LLM.
elphbolt
A solver for the coupled and decoupled electron and phonon Boltzmann transport equations.
def-au-asls-soil-prof
Machine-readable representation of the classifiers described in chapter 8 Soil Profile, by R.C. McDonald and R.F. Isbell, in Australian soil and land survey field handbook (3rd edn)
https://github.com/dcan-labs/abcd-func
A citizen science game for ABCD Study Quality Control of functional image registration.
stripepy-hic
StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning
mlscalib
A ML python-based package implementing a variety of the state-of-the-art ML-based SCA techniques that is easy to use and easy to extend.
scanometrics
Python package for automated normative modeling of MRI anatomical scans
open-medical-r1
This repository is aim to reproduce the R1-Zero on medical domain.
atrium-page-classification
Classification of historical page images using ViT - for ATRIUM project
sonlab-website
Son Research Lab – Computational Energy/Bio Soft Materials Lab Website
student-support-code-template
Template for providing student support code (e.g. source code and tests) for homework assignments.
modellbildung-und-simulation
This is a shallow mirror of https://github.com/hbrs-cse/Modellbildung-und-Simulation/
def-au-domain
A domain-model for soils, in the form of a set of classes and properties that define the entities ('features' in GIS-speak) that comprise the important concepts in soils.
1e2ph-spectral
Code for the long-range 1-electron-2-phonon spectral function, accompanies arXiv:2412.09470
