GitHub
rich_directrna
Nanopore directRNA (hopefully cDNA too ;)) workflow with many transcript reconstruction alternatives
adaptive-swtteo
Matlab-based single-channel spike detection algorithm for extracellular neural recordings.
dockstore-support
A collection of different projects supporting the dockstore initiative
shallowlearn
Rasterio wrappers focused on the sentinel-2 satellite with specific Machine learning applications on water
cpp_utils
A lightweight C++ utility module for multithreaded pipeline components and JSON handling. Includes a flexible StageBase class for real-time data processing and tools for loading, validating, and writing structured JSON files using RapidJSON.
hyperspectral_toolkit
Google Earth Engine (GEE) JavaScript-based tools for working with various hyperspectral datasets (e.g., AVIRIS, EMIT, Hyperion, PACE OCI)
docker-app-pdf-to-crop-svg
This is a Docker app designed to convert PDF files into SVG and 300 DPI PNG image files, and trim any excess white space.
igb-fuchs
IGB-FUCHS is an Electronic Lab Notebook with a focus on fieldwork, developed at IGB Berlin.
detection_inference
A high-performance, multi-threaded C++ pipeline for real-time multi-camera object detection using YOLOv8.
@stdlib/complex-float32-base-mul
Multiply two single-precision complex floating-point numbers.
lab-website
Source code for the Christian Brodbeck lab website at McMaster University
r-python
Denetimsiz Makine Öğrenmesi Algoritmaları: R ve Python Uygulamaları Kitabındaki R ve Python kodları
urnai-tools
A modular Deep Reinforcement Learning library that supports multiple environments, made with Python 3.6.
cog-octpsf-simulator
Simulator of optical coherence tomography's point-spread function with aberrations.
led-net
LED-Net: A lightweight and efficient dual-branch convolutional neural network designed to address the challenge of achieving high-performance tree branch and trunk semantic segmentation in resource-constrained mobile device environments.
schema
This repo collects the descriptions of the structure and the validation constraints of tools in the railtoolkit in JSON schemas. It is, therefore, an alternative to RailML.
cse-repo-of-advanced-computation-ml-and-systems-engineering
An independent open-access publishing archive maintained by Allan.
listening-beyond-the-labels-v1
A scalable and non-invasive speech-based machine learning model for early Alzheimer's detection using mel-spectrograms and lightweight semi-supervised CNN with no transcription or neuroimaging needed.
flir_icp_calib
ROS/ROS2 package to compute a homogeneous transformation from a multi-camera reference frame to a robot base frame, using an optical calibration target.
fluenthrc
Source code of the main application for the PhD thesis "Fluency in Dynamic Human-Robot Teaming with Intention Prediction"
interactivesignallinglaboratory
This education game is a physical model made from either paper craft or a wooden railway. It comes with tasks to illustrate block division, routes, timetabling, and infrastructure planning for students to immerse themselves in the problems of rail-guided transport.
detectcilia
R package to detect cilia and other colored structures in confocal fluorescence microscopy images
clariah-data-call-fotopersbureau-de-boer
Scripts and model for the FAIR Photos dataset
machine-translation-for-african-languages
This repository focuses on developing machine translation and NLP tools specifically for African languages. Join us in addressing the challenges and opportunities in this vital area of language technology! 🛠️🌍
enrichmap
EnrichMap: Spatially-informed enrichment analysis for functional interpretation of spatial transcriptomics.
aeon_mecha
Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.
ml-mix
Package for ML/ML Force Mixing with Machine Learning Potentials in LAMMPS
neville_codes
A collection of codes centred around reproducing figures from Alex Neville's thesis in 2018 and developing them further.
ss-nes-lesson
Training material of the software sustainability of the TDCC NES project
cats
Cluster Analysis of Trimmed Spectrograms: framework for detection and denoising of sparse signals in time-frequency domain.
workshop-introduction-to-r-and-data
Material for the workshop 'Introduction to R & data'
lcus_naive
LCuS.py is a naive O(n^5) approach to solving the longest cubic subsequence (LCuS) problem. For a string of characters, LCuS.py identifies the longest subsequence repeated three distinct times. It finds the optimal breakpoints to seperate the string into three consecutive substrings, each containing an interation of the subsequence.
ai_bio_project
This is the carpentries repository for our funded project "How to Build FAIR Domain-Specific Datasets for fine tuning/training NLP models"
stats-array-stdevyc
Calculate the standard deviation of an array using a one-pass algorithm proposed by Youngs and Cramer.
shepardtts
ShepardTTS is a fine-tuned XTTS v2.0.3 model, trained on paired dialogue/audio samples from the Mass Effect 2 and Mass Effect 3 base games.
bbox_controller
Collection of behavioral stimuli and paradigms for use with mouse behavior boxes.
zenodo-citation-example
Example of how to make GitHub repositories citable using Zenodo.
submitdatairidanext
Pipeline for submitting data to INSDC databases for IRIDA Next
@hugoalh/fs
An ECMAScript (JavaScript & TypeScript) module for enhanced file system operation.
r-tidyverse-compact
Kompaktübersicht über Datenverarbeitung mit R tidyverse Paketen
auto-sklong
☂️ Auto-Scikit-Longitudinal (Auto-Sklong) is an automated machine learning (AutoML) library designed to analyse longitudinal data (Classification tasks focussed as of today) using various search methods. Namely, Bayesian Optimisation via SMAC3, Asynchronous Successive Halving, Evolutionary Algorithms, and Random Search via GAMA
mpox-seek
A rapid pipeline for targeted and whole-genome ONT monkeypox sequencing
osa
Code for: Habitat edges affect tree diversity more than biomass regeneration in a wet neotropical secondary forest
multi-version-pyz-builder
The Multi-Version PYZ Builder Script is a command-line tool designed to create a Universal Python Module optimized for cross-platform and multi-version compatibility. It allows developers to bundle multiple protected .pyc files—each corresponding to a different Python version—into a single .pyz archive.
secure-python-code-manager
The Secure Python Code Manager is an innovative solution for developers looking to share Python code securely, protect their Python code, and implement Python code encryption techniques. By leveraging the Alpha Beta Network cloud platform, this tool addresses the challenges of secure code sharing and source code protection.