GitHub
snakemake-novice-lattice
Introduction to Snakemake for Lattice Quantum Field Theory
groeblacherlabcode
Public code of the Groeblacher Lab to control lab instruments.
mh1ddc
:earth_asia: MH1DDC is inversion software using Levenberg-Marquardt (LM) and Singular Value Decomposition (SVD) of one-dimension DC resistivity in MATLAB.
mh2dgrav
:earth_asia: MH2DGRAV is continuous two-dimension inversion of Gravity data based on Talwani formulation using very fast simulated annealing (VFSA) in MATLAB.
hagis
Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity
digitising-museum-specimens-tests
A set of scripts to test connectivity and speed to Azure storage
master-thesis
Code for my master thiesis in Theoretical Quantum Optics from Niels Bohr Institute, University of Copenhagen with supervision by Professor Klaus Mølmer
versatile-xr-user-identification
Implementation of "Versatile User Identification in Extended Reality Using Pretrained Similarity-Learning". Deep metric learning approach for identifying VR users from their movements.
nf-rsvpipeline
Viral RSV analysis pipeline using Illumina or Oxford Nanopore Technologies amplicon-based sequencing data
sigmajs
sigmajs: An R htmlwidget interface to the sigma.js visualization library - Published in JOSS (2018)
bit_vector
Fast and highly tuned bit vector implementation including space efficient rank and select support having only 3.51% space overhead.
stats-base-ndarray-sztest
Compute a one-sample Z-test for a one-dimensional single-precision floating-point ndarray.
@stdlib/complex-float32-conj
Return the complex conjugate of a single-precision complex floating-point number.
stats-strided-dsemwd
Calculate the standard error of the mean for a double-precision floating-point strided array using Welford's algorithm.
biobb-flexdyn
biobb_flexdyn is a BioBB category for studies on the conformational landscape of native proteins.
ParticleScattering
ParticleScattering: Solving and optimizing multiple-scattering problems in Julia - Published in JOSS (2018)
blas-base-ndarray-gdot
Compute the dot product of two one-dimensional ndarrays.
math-base-special-aversinf
Compute the inverse versed sine of a single-precision floating-point number (in radians).
hmm_kunitz_domain
Hidden Markov Model-based classification and structural validation of Kunitz-type protein domains. Includes sequence alignment, model training, validation on curated datasets, and structural quality assessment using PDBeFold and RMSD/Q-score analysis. Final project for the Laboratory of Bioinformatics 1 course at the University of Bologna.
sparseposer
Official Code for ACM Transactions on Graphics (TOG) paper "SparsePoser: Real-time Full-body Motion Reconstruction from Sparse Data"
spark-dynamic-executor-time-prediction
Neural Network Models for Predicting Execution Time with Dynamic Executor Allocation in Apache Spark.
sus-analysis-toolkit
A web-based analysis toolkit for the System Usability Scale providing calculation, plotting, interpretation and contextualization utility.
mrmagpie
The package provides cellular magpie related data via the madrat framework.
stats-strided-svariancewd
Calculate the variance of a single-precision floating-point strided array using Welford's algorithm.
scientific_research_scraper
[Python] Scraping tool for multiple databases using api's and ChromeDriver.
blas-ext-base-ndarray-gcusum
Compute the cumulative sum of a one-dimensional ndarray.
merge_open_hospital_data
A repository to keep track of the merging of open health facility data for the afrimapr and covidza projects
ruvpy
Reference implementation of the Relative Utility Value metric for forecast value assessment
nf-core-rnaseqdge
example nextflow pipeline with nf-core modules: RNA-seq and differential gene expression analysis
blas-base-wasm-dsdot
Compute the dot product of `x` and `y` with extended accumulation and result.
popglen
Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using ANGSD and related softwares. Flexible to datasets that combine high/low coverage and historical/fresh samples.
https://github.com/dmferrario2/dmferrario2
Config files for my GitHub profile.
nestedsamplers.jl
Implementations of single and multi-ellipsoid nested sampling
stats-strided-minsorted
Calculate the minimum value of a sorted strided array.
gutanalysistoolbox
Analysis and characterisation of cells within the gut wall using deep learning models. The current focus is on studying enteric neurons and enteric glia.
stats-incr-nanstdev
Compute a corrected sample standard deviation incrementally, ignoring NaN values.
ananta-theory
A symbolic and falsifiable cosmology exploring time emergence, coherence, and fractal intelligence.
