hippyflow • Science 67%

Dimension reduced surrogate construction for parametric PDE maps

PyCCEA — Peer-reviewed • Science 93%

PyCCEA: A Python package of cooperative co-evolutionary algorithms for feature selection in high-dimensional data - Published in JOSS (2025)

ConleyDynamics.jl — Peer-reviewed • Science 98%

ConleyDynamics.jl: A Julia package for multivector dynamics on Lefschetz complexes - Published in JOSS (2025)

pmv-si-2024-1-pe1-t3-si_t3_app_web_1osem2024_gp02 • Science 44%

pmv-si-2024-1-pe1-t3-si_t3_app_web_1osem2024_gp02 created by GitHub Classroom

pyccus-public • Science 44%

This is an in-house toolbox developed by SUETRI-A research group.

seabreeze — Peer-reviewed • Science 87%

seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies - Published in JOSS (2025)

Sugar — Peer-reviewed • Science 98%

Sugar: A Python framework for bioinformatics - Published in JOSS (2025)

ti-1-pmg-cc-t-20241-patinhas-felizes • Science 44%

ti-1-pmg-cc-t-20241-patinhas-felizes created by GitHub Classroom

kechrislab.github.io • Science 44%

Kechris Homepage

HySetter — Peer-reviewed • Science 93%

HySetter: A Python Package for Reproducible Hydroclimate Data Subsetting over CONUS - Published in JOSS (2025)

sequentialegm • Science 44%

Blobmodel — Peer-reviewed • Science 93%

Blobmodel: A Python package for generating superpositions of pulses in one and two dimensions - Published in JOSS (2025)

kaai_gaze • Science 54%

gpt-researcher-agent • Science 54%

edirom-window • Science 44%

NanoVer Server — Peer-reviewed • Science 98%

NanoVer Server: A Python Package for Serving Real-Time Multi-User Interactive Molecular Dynamics in Virtual Reality - Published in JOSS (2025)

ctxform • Science 57%

Equivalence checker for contextual formulas

test565 • Science 44%

test repository

ConFluxPro — Peer-reviewed • Science 93%

ConFluxPro: A toolkit for soil gas analysis - Published in JOSS (2025)

icra_2023 • Science 44%

This is the repository containing the codes we used in our ICRA23 paper.

kifmm-rs — Peer-reviewed • Science 93%

kifmm-rs: A Kernel-Independent Fast Multipole Framework in Rust - Published in JOSS (2025)

HeXtractor — Peer-reviewed • Science 93%

HeXtractor: Extracting Heterogeneous Graphs from Structured and Textual Data for Graph Neural Networks - Published in JOSS (2025)

mrimate • Science 44%

Limace.jl — Peer-reviewed • Science 93%

Limace.jl: A Julia package to compute hydromagnetic modes in spherical domains - Published in JOSS (2025)

QuantumReservoirPy — Peer-reviewed • Science 93%

QuantumReservoirPy: A Software Package for Time Series Prediction - Published in JOSS (2025)

SPARC-X-API — Peer-reviewed • Science 93%

SPARC-X-API: Versatile Python Interface for Real-space Density Functional Theory Calculations - Published in JOSS (2025)

Carnival — Peer-reviewed • Science 93%

Carnival: JVM Property graph data unification toolkit - Published in JOSS (2025)

openmpp — Peer-reviewed • Science 93%

openmpp: An R package for dynamic microsimulation modeling using OpenM++ - Published in JOSS (2025)

GraphBin-Tk — Peer-reviewed • Science 93%

GraphBin-Tk: assembly graph-based metagenomic binning toolkit - Published in JOSS (2025)

edc-0-6-4 • Science 44%

scproximite • Science 67%

sc Proximity Evaluation (scProximitE) is a framework for evaluating proximity metric performance on scRNA-seq data properties.

NMRInversions.jl, a Julia package for time-domain Nuclear Magnetic Resonance — Peer-reviewed • Science 98%

NMRInversions.jl, a Julia package for time-domain Nuclear Magnetic Resonance - Published in JOSS (2025)

video_conversion • Science 44%

cruzeiro-do-sul-database • Science 57%

Quati Beamline (Sirius-CNPEM) XAS database

PyRASA - Spectral parametrization in python based on IRASA — Peer-reviewed • Science 93%

PyRASA - Spectral parametrization in python based on IRASA - Published in JOSS (2025)

cb2 • Science 44%

test site

etnobotanica-bororo • Science 67%

vhdlmachines • Science 44%

The LLFSM Format for VHDL Machines.

fastfrechet — Peer-reviewed • Science 93%

fastfrechet: An R package for fast implementation of Fréchet regression with distributional responses - Published in JOSS (2025)

elasticity-controller-docker • Science 44%

Controlador de elasticidade para o TCC do 4 ano de Ciência da Computação na Unioeste

rkhsregularization.jl • Science 44%

Light weight RKHS regularization (e.g. Gaussian process regression without statistical-considerations) tools with dimensional expansion kernels.

BREADR — Peer-reviewed • Science 93%

BREADR: An R Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data - Published in JOSS (2025)

Slicer-Liver — Peer-reviewed • Science 93%

Slicer-Liver: A 3D Slicer Extension for Liver Surgery Planning - Published in JOSS (2025)

constrained_manipulability — Peer-reviewed • Science 93%

constrained_manipulability: A ROS 2 library to Compute and Visualize Constrained Capacities for Robotic Manipulators - Published in JOSS (2025)

bffs • Science 44%

MRI-NUFFT — Peer-reviewed • Science 93%

MRI-NUFFT: Doing non-Cartesian MRI has never been easier - Published in JOSS (2025)

An Introduction to prismAId — Peer-reviewed • Science 93%

An Introduction to prismAId: Open-Source and Open Science AI for Advancing Information Extraction in Systematic Reviews - Published in JOSS (2025)

testing3 • Science 44%

Dummy description.

nlp-processing • Science 44%

indexer-rollup • Science 44%

A rollup-indexing rollup built on the OP Stack

cotton_yield_estimation • Science 57%

detection-limit-fitting • Science 67%

Software for fitting robust detection limits to serial dilution data

iso-19139-to-dcat-ap • Science 44%

Reference XSLT-based implementation of GeoDCAT-AP

scrnaseq_howto_ga_workflows • Science 57%

Howto guide for scrnaseq workflows in scrnaseq_ga_workflows

darpanx • Science 67%

DarpanX is a Python 3 package that provides functionality to compute reflectivity and other specular optical functions of a multilayer or single layer mirror for different energy and angles as well as to fit the XRR measurements of the mirrors.

bitmarkerlove • Science 44%

dreamlab2024 • Science 52%

class demo repository for advocating for community, dreamlab 2024

detection-of-real-and-simulated-ecgs • Science 44%

datamanagement • Science 44%

two-bladed-wind-turbines • Science 67%

This repository is supposed to share wind turbine models to use in Bladed, together with the controller files and respective turbine data from the German government-funded project "X-Rotor -- two-bladed wind turbines" with the research community.

thresholdqst • Science 67%

A Python library to implement threshold quantum state tomography for qubits.

logisticchain • Science 44%

The logistics platform model based on hyperledger fabric blockchain, complete simulation of the entire international shipping process.

atomictools • Science 44%

Python package to create and visualize atomic orbitals and more

xai_cost • Science 67%

PhenoFeatureFinder — Peer-reviewed • Science 95%

PhenoFeatureFinder: a python package for linking developmental phenotypes to omics features - Published in JOSS (2024)

st4sd-olm • Science 44%

An Operator Lifecycle Manager (OLM) operator to automate installing and upgrading ST4SD deployments on OpenShift clusters

covid-campus-phylodynamics • Science 67%

Git Repo for the paper: On-Campus Dormitories as Viral Transmission Sinks: Phylodynamic Insights into Student Housing Networks During the COVID-19 Pandemic

neunorm • Science 49%

Neutron Imaging Loading and Normalization Tools

palomarlab.github.io • Science 44%

Source code for palomarlab website

transmedicalhistory • Science 44%

ontology-overview-of-nfdi4cat • Science 49%

Repository which lists several ontologies relevant for catalysis research.

pfusetup • Science 54%

adjoining-gate • Science 44%

abvi-grant-collectionbuilder • Science 44%

AVBI Grant Repository

microbial-richness-troposphere • Science 67%

Accompanying code for the manuscript "Microbial species richness in tropospheric samples above the planetary boundary layer confirms hundreds of Km long-distance transport of potential human pathogens"

ganongnoelui • Science 44%

dissertation-learning-tofly • Science 67%

rfkindianacamp • Science 44%

Final project documenting RFK's 1968 presidential campaign in Indiana

pco-si-2024-1-tiaw-blood-on • Science 44%

pco-si-2024-1-tiaw-blood-on created by GitHub Classroom

mapsea • Science 57%

Mapping And Prediction of Shared Elements in Alignments

ciqss-webinar-2025 • Science 44%

Webinar

broadway-edft • Science 44%

Broadway code for implementing ensemble DFT and mathematically similar theories

trycycler • Science 67%

A tool for generating consensus long-read assemblies for bacterial genomes

tello_ros • Science 44%

C++ ROS2 driver for DJI Tello drones [requires Foxy and Gazebo Classic -- both EOL]

mutiltask_mmdetection • Science 44%

GOBLIN Lite — Peer-reviewed • Science 93%

GOBLIN Lite: A National Land Balance Model for Assessment of Climate Mitigation Pathways for Ireland. - Published in JOSS (2024)

ml-gymnasium-fork • Science 49%

yolov5-iron • Science 54%

基于yolov5的钢铁连铸加渣模型

fooof-modified • Science 57%

This is the FOOOF (specparam) python package. An additional mode "knee_expo" was implemented. This mode adds to the function of the knee mode an exponent that corrects the fitting in higher frequencies.

st4sd-runtime-k8s • Science 44%

Kubernetes operator for instantiating ST4SD virtual experiments on K8s.

sr-tod • Science 54%

This is the official code for the paper Visible and Clear: Finding Tiny Objects in Difference Map.

multi-connect • Science 44%

A continuation of mpconn

jubench-dynqcd • Science 62%

JUPITER Benchmark Suite: DynQCD Benchmark

monetdb-import • Science 67%

Importer of gathered data into a MonetDB database

sorotokicode • Science 57%

SOROTOKI is an open-source MATLAB package that includes an array of tools for design, modeling, and control of soft robotic systems 🐙 🤖

sandboxels • Science 44%

private_gpt_medical • Science 44%

prescripty • Science 44%

Early version of Scripty during development.

labour_function_sudam • Science 44%

Base de datos sobre ocupaciones y funciones económicas en Latinoamérica | Database on Occupations and Economic Functions in Latin America

trainar • Science 49%

An interaction concept & visual scripting-based authoring tool for procedural Mobile (Android & iOS) Augmented Reality trainings.