GitHub
https://github.com/aliceo2group/aliceo2
O2 software project for the ALICE experiment at CERN
https://github.com/alleninstitute/mies
Multichannel Igor Electrophysiology Suite
https://github.com/dmentipl/multigrain
A smoothed particle hydrodynamics algorithm for multigrain dust with separate sets of particles
dreq_tools
Tools for updating the EERIE data request as well as the tables in various formats
https://github.com/dmentipl/flyby-observational-signatures
Flybys in protoplanetary discs - II. Observational signatures
sixarm_debian_zeromq_packages
SixArm.com » Debian » ZeroMQ packages for message queues
aims-dscbi
Data science course for Rwanda national statistical system (NSS) staff
https://github.com/amlalejini/alife-2025-env-conn
Holds supplemental materials, code, configuration settings, et cetera for 2025 ALife conference paper, "Environmental connectivity influences long-term evolutionary outcomes"
mitos_scripts.jl
Command Line Scripts for the MIToS Package to Analyze Protein Sequence and Structure
https://github.com/andim/pyrepseq
Python library for immune repertoire analysis
https://github.com/ankitbarik/topo_nutation
Code and figures for paper on nutation and dissipation due to topography at the core mantle boundary
https://github.com/annarufas/rufas_etal_2024_grl
Code and data necessary to reproduce the figures in our study "Can we Constrain Geographical Variability in the Biological Carbon Pump's Transfer Efficiency from Observations?".
https://github.com/ansleybrown1337/lysimeter-analysis
Python package that processes and analyzes weighing lysimeter data for quantifying crop water use (i.e., evapotranspiration).
https://github.com/dmetivie/smoothperiodicstatsmodels.jl
A Julia package for time series and other models with smoothly varying periodic parameters
https://github.com/ap6yc/dccr
Deep Clustering Context Recognition (DCCR); materials for the upcoming paper "Lifelong Context Recognition via Online Deep Feature Clustering."
mtcm-kd
multi-teacher cross modal knowledge distillation for brain tumor segmentation
breastdcedl
BreastDCEDL Pretreatment MRI scans of 2070 Breast cancer patients. A Deep Learning-Ready DCE-MRI Breast Cancer Dataset from I-SPY2 and I-SPY1 trials (1,2 and DUKE.
ppl-cd-pcd-sist-int-2024-1-sleepresearch-2024-1
ppl-cd-pcd-sist-int-2024-1-sleepresearch-2024-1 created by GitHub Classroom
https://github.com/aria-systems-group/pddltosim
Source code for abstraction construction from PDDL, strategy synthesis, and visualization using Pybullet
https://github.com/dmetivie/randomizedquasimontecarlo.jl
Some randomization methods for Randomized Quasi Monte Carlo e.g. scrambling, shift
https://github.com/arkokupski-wat/bn-field-hypothesis
Hypothesis about gravity-induced BN fields (just for fun) #AlternativePhysics #DarkMatter #QuantumTorsion
csci-4511w-final
My final project for CSCI 4511W at the University of Minnesota
https://github.com/astrazeneca/diffabxl
The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs", formerly titled "Benchmarking Generative Models for Antibody Design".
idf-external-hw-drivers
An assortment of drivers compatible with ESP IDF developed, tried, and qualified as working
run-cff-validator
Add a citation file to this repo and run the cff-validator GitHub Action
https://github.com/b-cubed-eu/dissmapr
Workflow for Compositional Dissimilarity and Biodiversity Turnover Analysis
https://github.com/barahona-research-group/severability
Code for the severability component quality function
pat_qgis_plugin
PAT is a QGIS plugin containing a collection of tools for processing precision agriculture data.
xsrecency
Package for incidence estimation via recency assays with single time-point cross-sectional data collection
cellsamsegmentation-pluripotent-differentiation
Perform CellSAM segmentation interactively
https://github.com/benjaminwehnert1008/deepmutscan
nf-core/deepmutscan is a reproducible, scalable, and community-curated pipeline for analyzing deep mutational scanning (DMS) data using shotgun DNA sequencing.
graphfragments.jl
Implementation of Graph Fragmentation in serial and in parallel.
https://github.com/bgeedb/bgee_pipeline
Source code of the Bgee pipeline used to build the Bgee database
trapi-predict-kit
🧰 A package to help create and deploy Translator Reasoner APIs (TRAPI) from any prediction model exposed as a regular python function.
superdrops-in-action
Various plotting scripts and applications of CLEO superdroplet model
distilabel
Distilabel is a framework for synthetic data and AI feedback for engineers who need fast, reliable and scalable pipelines based on verified research papers.
terraform-aws-secretsmanager-for-provider-secrets
A _coupled_ pattern for sourcing provider secrets from AWS SecretsManager
sharetraitdatabase
ShareTrait Database — a relational SQL database providing a structured implementation of the ShareTrait data. It includes the full schema definition, data tables and supporting documentation.
2017-10-19-universitybotswana
This is a repository for the Software Carpentry workshop that will take place from 19 - 20 October at the University of Botswana
avoiding-collinearity
Code and tests for determining an upper bound on the number of collinear points in an infinite walk on a finite set of vectors in Z^3.
pylaserpulse
A simulation toolbox for modelling laser pulse propagation through nonlinear, dispersive, active, and passive optical fibre systems in python.
stats-strided-dsnanmeanpn
Calculate the arithmetic mean of a single-precision floating-point strided array, ignoring NaN values, using a two-pass error correction algorithm with extended accumulation, and returning an extended precision result.
stats-strided-meanors
Calculate the arithmetic mean of a strided array using ordinary recursive summation.
synthnn
A Python package for estimating treatment effects using Synthetic Nearest Neighbors
2025-05-27-uw
Website for the Software Carpentry Workshop at the University of Washington on May 27–30, 2025.
mhd-2d-sphere
These Python scripts support the findings of our study, Nakashima & Yoshida (2024).
runtime-info-es
An ECMAScript (JavaScript & TypeScript) module for runtime information.