GitHub
photoperiodlocaladaptation
Scripts for Wang et al. (2017) "A major locus controls local adaptation and adaptive life history variation in a perennial plant". https://www.biorxiv.org/content/early/2017/12/13/178921 https://zenodo.org/badge/100579273.svg
aspenpopulationgenomics
Scripts for Wang et al. (2016) "Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species" Genetics 202, 1185-1200. http://doi.org/10.1534/genetics.115.183152
stableexpression
Pipeline dedicated to finding the most stable genes among a single or multiple expression dataset(s). It is useful in particular for finding the most suitable RT-qPCR reference genes for a specific species.
simpleoctree
An adaptive 2:1 balanced tree for point distributions in 2D and 3D. Written in Python with minimal dependencies.
hydra-scraper
Comprehensive scraper for paginated APIs, RDF, XML, file dumps, and Beacon files
arch2020_aff_re
Repeatability Evaluation package for the ARCH2020 AFF Competition
astro-elisa
Efficient library for spectral analysis in high-energy astrophysics.
bihc
Beam Induced Heating Computation (BIHC) tool allows the estimation of the dissipated power due to the passage of a particle beam inside an accelerator component
2025_cagis_special-issue_article
Repository for our paper entitled: "Reproducible visualization strategies for spatially varying coefficient (SVC) models: Incorporating uncertainty and assessing replicability"
https://github.com/ivorytower152/tuning_playbook
A playbook for systematically maximizing the performance of deep learning models.
tudelft_v3_kite
A data repository containing all relevant analysis and specification of the TUDELFT V3 Leading-Edge-Inflatable kite
costly
Estimate costs of complex LLM workflows in advance before spending money
burgers-vector-calculator
Program that computes Burgers vectors from elastic strain and lattice rotation data
intro-bayesian-statistics-training
SIB course on bayesian statistics with applications using Rstan
stats-strided-wasm-dmeanwd
Calculate the arithmetic mean of a double-precision floating-point strided array using Welford's algorithm.
installkernel-wsl
Script and installkernel hook to copy Linux kernel to the host system and update .wslconfig.
fair-convergence-matrix
Basic code to create FAIR convergence matrix from nanodash nanopublications
sequencecomposition
Nextflow DSL2 pipeline to extract statistics from a genome about its sequence composition
neuco-bench
Welcome to NeuCo-Bench, a benchmarking framework for evaluating compressed embeddings on downstream tasks.
pmv-si-2023-2-pe1-t2-house-hero
pmv-si-2023-2-pe1-t2-house-hero created by GitHub Classroom
https://github.com/ivorytower152/denoising-diffusion-pytorch
Implementation of Denoising Diffusion Probabilistic Model in Pytorch
eista
A single-cell spatial transcriptomics pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.
lkfmixer
LKFMixer: Exploring Large Kernel Feature For Efficient Image Super-Resolution
https://github.com/boyle-lab/gpatch-manuscript
Data retrieval and Analysis steps for the GPatch manuscript.
presentation.template
This repository contains latex templates for NumPEx documents
neuropyxels
NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.
ssp-mmc
A Stochastic Shortest Path Algorithm for Optimizing Spaced Repetition Scheduling
recoll
Recoll is a desktop full-text search tool (forked from the original at framagit)
https://github.com/ivorytower152/mmpose
OpenMMLab Pose Estimation Toolbox and Benchmark.
aises-virtue-ethics
Teach virtue ethics to AI, an alternative approach to ConstitutionalAI. Final project for the AISES course, fall 2025
repilot
Repilot, a patch generation tool introduced in the ESEC/FSE'23 paper "Copiloting the Copilots: Fusing Large Language Models with Completion Engines for Automated Program Repair"
hermes_metadata_lesson
Data and Metadata in the Humanities: Structures, Schemas, and Standards
pyigmap
[UNDER DEVELOPMENT] Pipeline for mapping and annotating T- and B-cell receptor gene rearrangement sequences
libs.tn
Automatische data extractie en dataverwerking voor de TN studie aan de HHS
bioc-rnaseq
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
hermes_stat_inf_data_vis
Statistical inference and data visualization for the humanities
la-rape-ia
Markov 2000 est une râpe à fromage modifié pour "rapper des mots" grâce au modèle de Markov.
judy
Judy is a python library and framework to evaluate the text-generation capabilities of Large Language Models (LLM) using a Judge LLM.
elphbolt
A solver for the coupled and decoupled electron and phonon Boltzmann transport equations.