GitHub
tomo_mapper
The SEM-FIB-Tomography Mapper is a tool designed for mapping SEM (Scanning Electron Microscope) images and SEM-FIB Tomography metadata to a uniform, schema-compliant json format.
stats-strided-nanminabs
Calculate the minimum absolute value of a strided array, ignoring NaN values.
roadeye
A computer vision project for detecting motorcycle riders, helmets, and number plates using YOLOv5. This system can identify riders wearing helmets, those without helmets, and capture number plates for road safety enforcement.
stats-strided-dnanvariancewd
Calculate the variance of a double-precision floating-point strided array ignoring NaN values and using Welford's algorithm.
rediscoverte
Pipeline for quantifying genome-wide TE expression in RNA sequencing data
https://github.com/devidw/bootstrap-docs-redirect
Automatically redirect to the documentation of the latest Bootstrap version whenever you ended up on an outdated documentation page.
citeassist
CiteAssist generates preprints, suggests related papers, and adds BibTeX annotation to the PDF
kruskal-veldman
An adaptation of Wim Veldman's proof of the tree theorem to Coq
https://github.com/devidw/zoho-inventory-bulk-create-categories
Bulk create Zoho Inventory categories
parametric-nn-models
Physics-Informed Neural Network, Finite Element Method enhanced neural network, and FEM data-based neural network
burgesslab
Source Code for Harold Burgess Neural Circuits and Behavior Lab website
citation-style-manager
Implement a function change_style(filepath, style), which takes as input two arguments: (1) filepath, which can be either IEEEexample.docx or APAexample.docx and (2) style (a string being either IEEE or APA), and swaps their citation style (i.e., converts IEEE citations into APA and vice versa).
cymetric
A package to compute Calabi-Yau metrics in pytorch or tensorflow, with mathematica support
https://github.com/devidw/gmail-dark-compose
Chromium Extension which enables dark New Message aka Compose Area in Gmail
acevegantt
acevegantt: A Free and Open-source Full-stack Gantt Chart Implementation for Managing Academic Events
labbook-and-timekeeping
A project to document thought process and other stuff like a lab book which also delineates a proper time table of time spent working.
https://github.com/devidw/migrate-avira-passwords-to-google
Prepare Avira Password Manager CSV export for Google Passwords import
rsfc
Repository for development on the Research Software Quality Checks (RSQC) package
exosim
ExoSim 2 is the next generation of the Exoplanet Observation Simulator (ExoSim) tailored for spectro-photometric observations of transiting exoplanets from space, ground, and sub-orbital platforms. This software is a complete rewrite implemented in Python 3, embracing object-oriented design principles.
essflows
MAPPING ECOSYSTEM SERVICE FLOWS IN SENEGAL: Sardinella protein flows from small scale fisheries
unsupervised-multimodal-trajectory-modeling
We use EM for a mixture of state space models to perform unsupervised clustering of short trajectories.
https://github.com/geoscienceaustralia/dea-knowledge-hub
DEA Knowledge Hub — The Knowledge Hub brings together information about Digital Earth Australia’s products and services, allowing you to utilise our free and open-source satellite imagery archive.
geobenchx
LLM-agents benchmark set of geospatial tasks requiring multi-step tool use; and LLM-as-Judge based evaluation framework.
https://github.com/geoscienceaustralia/dea-config
Config files for dea services
grasptools
A collection of tools for MCDHF based programs such as GRASP, developed by me
https://github.com/devidw/coverimagegenerator
Generate Cover Images for your blog articles
arachne
Thread and run commands in parallel using json objects, headless or displayed in panes for monitoring and control
https://github.com/geoscienceaustralia/nhi-tsed
Extraction and analysis of weather station observations for thunderstorm events
https://github.com/devidw/cheat-sheets
A collection of school related cheat sheets
prehgt
A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT
https://github.com/geoscienceaustralia/swhaq
Severe Wind Hazard Assessment for Queensland
ndarray-vector-int8
Create a signed 8-bit integer vector (i.e., a one-dimensional ndarray).
https://github.com/devidw/obsidian-kimbie-dark
Kimbie Dark color theme for Obsidian.
proteomegenerator3
Generate proteogenomics search databases from long-read RNAseq
https://github.com/geoscienceaustralia/coregistration-software-evaluation
coregistration software evaluation
kendall
Calculate non-parametric correlation coefficient Kendall's tau, accounting for censoring (upper/lower limits).
duckbridge
Lightweight Python wrapper around the DuckDB extension, httpserver (extension developed by @quackscience)
https://github.com/devidw/tortoise-tts-fast
Fast TorToiSe inference (5x or your money back!)
multi-shell-dmriharmonization
Harmonization of multi-site, multi-shell diffusion MRI
https://github.com/geoscienceaustralia/sira
Systemic Infrastructure Resilience Analysis
shift15m
SHIFT15M: Fashion-specific dataset for set-to-set matching with several distribution shifts
argo-messaging
The ARGO Messaging API is implemented as a Publish/Subscribe Service. Instead of focusing on a single Messaging API specification for handling the logic of publishing/subscribing to the broker network the API focuses on creating nodes of Publishers and Subscribers as a Service.
https://github.com/geoscienceaustralia/dea-sandbox
Digital Earth Australia Sandbox config and planning
amiris
Agent-based Market model for the Investigation of Renewable and Integrated energy Systems (Official GitLab Mirror)
https://github.com/kukininj/byebit
projekt portfela kryptowalut na zajęcia z Technologii Blockchain w Nauce i Technice
https://github.com/devidw/styletts2
StyleTTS 2: Towards Human-Level Text-to-Speech through Style Diffusion and Adversarial Training with Large Speech Language Models
packaging_data_with_ro-crate
Carpentries style lesson for packaging research data using RO-crate
tholos
Embeds iterative scripts and its interpreter into a golang file and compiles a standalone binary, allowing for the simple and reliable inclusion of modules written in python and other languages into go applications
boeken_tauopathies
Code repository for the single-molecule evaluation of tauopathies project led by Dorothea Boeken