GitHub
ar7-wg1-fod-ch99-fig99-python
example, base on ar6 chapter3 figure11, https://github.com/IPCC-WG1/Chapter-3_Fig11
volume-cartographer
Volumetric processing toolkit and C++ libraries for the recovery and restoration of damaged cultural materials
https://github.com/inutano/rsem
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
fluidimage
:sparkler: A libre Python framework for scientific treatments of large series of images (publish-only mirror)
glamod-marine-processing
Code and configuration for GLAMOD marine data processing
lc-containers_vms
Library Carpentry Containers and Virtual Machines for Librarians
notch-delta-coupling
Source code for "Coupling dynamics of 2D Notch-Delta signalling", by Francisco Berkemeier and Karen M. Page
faser-2-mphys-project-acts
My edits to the ACTS simulation software for simulating background radiation in the FASER-2 detector.
https://github.com/ivis-at-bilkent/cytoscape.js-cose-bilkent
The CoSE layout for Cytoscape.js by Bilkent with enhanced compound node placement.
mech-m-dual-1-dbm
Course material for a ~3 * 15 hours (5 ECTS) course on basic concepts for data science. All the topics are presented with the Python implementation included. We cover matrix decompositions, regression, signal processing, sparsity and compressed sensing and a bit of statistics.
https://github.com/inutano/pitagora-cwl
Common Workflow Language tools and workflows by Pitagora-Network
m4fsdp
Output routines for extracting results from the MAgPIE framework (versions 4.x) for the FSDP project
burgers-vector-calculator
Program that computes Burgers vectors from elastic strain and lattice rotation data
intro-bayesian-statistics-training
SIB course on bayesian statistics with applications using Rstan
anomalydetector
Intelligent Surveillance System Using Motion Anomaly Detection
stats-strided-wasm-dmeanwd
Calculate the arithmetic mean of a double-precision floating-point strided array using Welford's algorithm.
installkernel-wsl
Script and installkernel hook to copy Linux kernel to the host system and update .wslconfig.
fair-convergence-matrix
Basic code to create FAIR convergence matrix from nanodash nanopublications
sequencecomposition
Nextflow DSL2 pipeline to extract statistics from a genome about its sequence composition
neuco-bench
Welcome to NeuCo-Bench, a benchmarking framework for evaluating compressed embeddings on downstream tasks.
pmv-si-2023-2-pe1-t2-house-hero
pmv-si-2023-2-pe1-t2-house-hero created by GitHub Classroom
https://github.com/ivorytower152/denoising-diffusion-pytorch
Implementation of Denoising Diffusion Probabilistic Model in Pytorch
eista
A single-cell spatial transcriptomics pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.
lkfmixer
LKFMixer: Exploring Large Kernel Feature For Efficient Image Super-Resolution
https://github.com/boyle-lab/gpatch-manuscript
Data retrieval and Analysis steps for the GPatch manuscript.
presentation.template
This repository contains latex templates for NumPEx documents
neuropyxels
NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.
ssp-mmc
A Stochastic Shortest Path Algorithm for Optimizing Spaced Repetition Scheduling
recoll
Recoll is a desktop full-text search tool (forked from the original at framagit)
https://github.com/ivorytower152/mmpose
OpenMMLab Pose Estimation Toolbox and Benchmark.
aises-virtue-ethics
Teach virtue ethics to AI, an alternative approach to ConstitutionalAI. Final project for the AISES course, fall 2025
repilot
Repilot, a patch generation tool introduced in the ESEC/FSE'23 paper "Copiloting the Copilots: Fusing Large Language Models with Completion Engines for Automated Program Repair"
hermes_metadata_lesson
Data and Metadata in the Humanities: Structures, Schemas, and Standards
pyigmap
[UNDER DEVELOPMENT] Pipeline for mapping and annotating T- and B-cell receptor gene rearrangement sequences
libs.tn
Automatische data extractie en dataverwerking voor de TN studie aan de HHS
bioc-rnaseq
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
hermes_stat_inf_data_vis
Statistical inference and data visualization for the humanities
la-rape-ia
Markov 2000 est une râpe à fromage modifié pour "rapper des mots" grâce au modèle de Markov.
judy
Judy is a python library and framework to evaluate the text-generation capabilities of Large Language Models (LLM) using a Judge LLM.
elphbolt
A solver for the coupled and decoupled electron and phonon Boltzmann transport equations.
def-au-asls-soil-prof
Machine-readable representation of the classifiers described in chapter 8 Soil Profile, by R.C. McDonald and R.F. Isbell, in Australian soil and land survey field handbook (3rd edn)
https://github.com/dcan-labs/abcd-func
A citizen science game for ABCD Study Quality Control of functional image registration.
stripepy-hic
StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning