GitHub
helical
A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
an-empirical-study-of-algebraic-algorithms-in-perfect-matching
Julia implementations of algebraic algorithms in perfect matching
lwt-website
source code for UBCRCC website created using the lab website template
lja_python_for_librarians
Instructional material for Library Juice Academy Python For Librarians
giraffe-identification-ai-tool
AI-Driven Vision Tool for Identifying Individual Giraffes
fair-python-cookiecutter-demo
Live demo to demonstrate a repository created from the fair-python-cookiecutter template.
rna-ligand-based
Evaluation of ligand based methods applied to RNA and DNA targets
evdmeshlib
The code that accompanies the research article in Neurosurgical Focus https://doi.org/10.3171/2025.4.FOCUS25163
nsd2_req_subunit
Code for Paper : NSD2 is a requisite subunit of the AR/FOXA1 neo-enhanceosome in promoting prostate tumorigenesis
ivb-replication
Replication code for the IVB model with Hierarchical Perceptive Memory and Adaptive Conditional Path
argmining20-social-bias-argumentation
Code for the paper "Argument from Old Man’s View: Assessing Social Bias in Argumentation".
automated-california-av-dataset
AV Collision report dataset from California DMV
classiq-library
The Classiq Library is the largest collection of quantum algorithms and applications. It is the best way to explore quantum computing software. We welcome community contributions to our Library 🙌
bachelor_thesis_project
System for Training-based Expansion of Tools for Proper Name Mentions Recognition Based on Active Learning
forex-trading-automation-with-deep-reinforcement-learning
Forex Trading Automation with PPO, ACKTR, DDPG, TD3 and Ensemble Strategy
thruster_optimization
Code for the optimization of cusped field thruster designs
madrigalweb
madrigalWeb is a pure python module to access data from any Madrigal database
https://github.com/danieldoehring/slides
Collection of Slides of Presentations and Talks I gave
https://github.com/danieldoehring/paper-2025-perrk
Reproducibility Repository for the paper "Paired Explicit Relaxation Runge-Kutta Methods: Entropy Conservative/Stable High-Order Optimized Multirate Time Integration"
gama-f1
“Fork of the GAMA AutoML framework with modifications to use F1 score as the primary evaluation metric.
evobandits
cutting-edge optimization algorithm that merges genetic algorithms and multi-armed bandit strategies to efficiently solve stochastic problems
agilerl
Streamlining reinforcement learning with RLOps. State-of-the-art RL algorithms and tools, with 10x faster training through evolutionary hyperparameter optimization.
decision-jungles
Python implementation of the Decision Jungles paper by Microsoft (compatible with scikit-learn)
common-data-format-validator
JSON Schema Validition for the Soccer Common Data Format
minesweeper-cheat
💣 A game cheat for Microsoft Minesweeper. It will change the window title to "Mlnesweeper" if the current block has a mine.（微软扫雷游戏的作弊工具，如果当前方块有雷，窗口标题会被修改为“Mlnesweeper”。）
evolver-ui
reference web app implementation for the evolver, an opensource bio reactor produced by fynchbio.com
post-ocr-text-correction
Repository for post-OCR text correction for Bulgarian historical documents
swminimal
SpokenWebathon: Lo-Fi, Minimal Computing Approaches to Audio Collections
jellyfish
Jellyfish plots for integrative visualization of spatio-temporal tumor evolution and clonal dynamics
CRSocket
CRSocket: A web app component facilitating the administration of digital trials from a separate device - Published in JOSS (2023)
awesome-visual-place-recognition
A curated list of awesome Visual Place Recognition papers
p5catalyst
A GUI wrapper that powercharges your p5.js sketches into polished and robust web apps.
revisitnnweightinit
The repository associated with the paper "Revisiting Weight Initialization of Deep Neural Networks".
dataprivacyhandbook
Repository for the Data Privacy Handbook @UtrechtUniversity, a practical guide on handling personal data in scientific research
cytosnake
Orchestrating high-dimensional cell morphology data processing pipelines
port-of-mars-analysis
R analysis pipeline for Port of Mars "Mars Madness" tournaments
heco
A julia package for linear Homogenization using FFT technique with CPU/GPU.
hsf-training-matplotlib
Create commonly used plots in HEP with matplotlib and mplhep
hsf-training-cicd-basics-webpage
An introduction to the basics of continuous integration (CI) and continuous deployment (CD).
model_spinorbitmerism
Codes used to generate the data and Figures of "Competition between Spinmerism and Spin-orbit for a d2 Metal Ion in An Open-Shell Ligand Field"
autoates-v2.0
A fully automated algorithm used to provide ATES mapping for large areas.
