GitHub
gnn_tracking
Reconstruct billions of particle trajectories with graph neural networks
propulate
Propulate is an asynchronous population-based optimization algorithm and software package for global optimization and hyperparameter search on high-performance computers.
pricepoints
Price Points research, data analyses, and packages. Informational only, not official Turquoise Health products
training-load-review-data
Systematic review of the training load and injury risk field [dataset]
11521-adv-geo-comp
Syllabus and materials for redesigned 11.521, Advanced Geographic Computation for Urban Planning
2025-06-16-strathclyde
Carpentries website for presentation in SIPBS, June 2025
https://github.com/jageo/tutorialatomate2forcefields
Tutorial to learn basic features of atomate2
theodolite
Theodolite is a framework for benchmarking the horizontal and vertical scalability of cloud-native applications.
exam_forecast
Companion analysis to a paper published in the Journal of Digital Imaging.
openmind
I use a simple model to investigate the epistemic value of open-mindedness. This repository contains the code for a model of the epistemic value of open-mindedness and for producing some figures.
https://github.com/jageo/pymatgen
Python Materials Genomics (pymatgen) is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes. It is currently the core analysis code powering the Materials Project.
architxt
ArchiTXT is an open source Python library that transforms unstructured text into structured, searchable, and AI-ready data. It enables automated database generation and seamless data integration.
gemelos-digitales-proyecto-final-escalante-21212151-
Proyecto Final: Proceso de inflamación (3 poblaciones)
abc
Code accompanying the publication "Enhancing Bacterial Adhesion with Hydro-Softened Chitosan Films"
fastqrepair
A pipeline that can be used to recover corrupted FASTQ.gz files, drop or fix uncompliant reads, remove unpaired reads, and settles reads that became disordered
detaxizer
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
reproducible-research-with-gpu-jupyter
This repository demonstrates how to use GPU-Jupyter for reproducible deep learning research with minimal setup effort..
sammyseq
Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.
replicability-presentation-2022
Presentation on Lessons Learned after 1000 articles
splineomics
Timeseries analysis of -omics data can be carried out by fitting spline curves to the data and using limma for hypothesis testing. The obtained hits can be clustered based on the spline shape and then used for an overrepresentation (ORA) analysis.The R package SplineOmics streamlines this whole process and generates reports
crowdtangle-api-schema
Simple ontological representation of the CrowdTangle API to be used in a Tropy template
statrom
Python code to reproduce the results in our reduced order statFEM paper.
https://github.com/jageo/lobsterautomation
This is a package to reproduce the publication on Lobster automation
mbed-torch-fusion-os
MbedTorch FusionOS: Seamlessly merges Mbed OS with Torch ML models for the P-Nucleo-WB55 on Arm Cortex M4. Empowering edge computing with efficient ML deployment.
https://github.com/jageo/bam-jobflow-tutorial
This is an interactive jobflow tutorial for new users.
kececinumbers
Keçeci Numbers, Keçeci Sayıları, kececinumbers, Keçeci Conjecture
daef
Python language implementation of the Deep Autoencoder for Federated learning (DAEF).
mrs_lib
UAV C++ libraries, mostly ROS-related, part of the "mrs_uav_core" package.
timestamp-data-collection-for-tdc1-in-c
Data collection in C from TDC1 Time to digital converter for use in lab work and Bachelor thesis
openhands-versa
Code for the paper "Coding Agents with Multimodal Browsing are Generalist Problem Solvers"
PeriodicOrbits
Interface and algorithms for finding periodic orbits (stable or unstable) in dynamical systems
geoscopr-maps
Maps for the GEOSCOPR (Geospace and Exploration with Scientific COllaboration in Polar Regions) report for IPY5.
