GitHub
ready4show
Tools for implementing replicable workflows to share insights into projects developed with the ready4 suite
amk_tools
Generation of visualization dashboards for reaction networks in AutoMeKin, including networks, energies, molecular models and profiles, based in Bokeh
grobid-datacat-trainingdata
Training datasets for GROBID sale catalogues models.
https://github.com/alan-turing-institute/decovid-data-paper
Repository linked to the DECOVID data descriptor paper to provide information about the data collection, data quality and the code for figures in the paper.
plmg-cc-ti2-2024-1-g21-proknow
plmg-cc-ti2-2024-1-g21-proknow created by GitHub Classroom
transformer-attention
compare the theory attention gradient with PyTorch attention gradient
xolotl
A MATLAB neuron simulator. Very fast (written in C++). Flexible (fully object oriented). Immediate (live manipulation in MATLAB). Comes with a powerful parameter optimizer. Get started ➡️
cariboursf_nt
This is a module that implements the Boreal CaribouResource Selection Function model developed by DeMars et al., 2019 for the Northwest Territories in Canada
comm_metricsnwt
Community metrics SpaDES module. Was developed for the NWT but is flexible to be used anywhere
training-load-review-data
Systematic review of the training load and injury risk field [dataset]
11521-adv-geo-comp
Syllabus and materials for redesigned 11.521, Advanced Geographic Computation for Urban Planning
2025-06-16-strathclyde
Carpentries website for presentation in SIPBS, June 2025
https://github.com/jageo/tutorialatomate2forcefields
Tutorial to learn basic features of atomate2
theodolite
Theodolite is a framework for benchmarking the horizontal and vertical scalability of cloud-native applications.
exam_forecast
Companion analysis to a paper published in the Journal of Digital Imaging.
openmind
I use a simple model to investigate the epistemic value of open-mindedness. This repository contains the code for a model of the epistemic value of open-mindedness and for producing some figures.
https://github.com/jageo/pymatgen
Python Materials Genomics (pymatgen) is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes. It is currently the core analysis code powering the Materials Project.
architxt
ArchiTXT is an open source Python library that transforms unstructured text into structured, searchable, and AI-ready data. It enables automated database generation and seamless data integration.
gemelos-digitales-proyecto-final-escalante-21212151-
Proyecto Final: Proceso de inflamación (3 poblaciones)
abc
Code accompanying the publication "Enhancing Bacterial Adhesion with Hydro-Softened Chitosan Films"
fastqrepair
A pipeline that can be used to recover corrupted FASTQ.gz files, drop or fix uncompliant reads, remove unpaired reads, and settles reads that became disordered
detaxizer
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
reproducible-research-with-gpu-jupyter
This repository demonstrates how to use GPU-Jupyter for reproducible deep learning research with minimal setup effort..
sammyseq
Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.
replicability-presentation-2022
Presentation on Lessons Learned after 1000 articles
splineomics
Timeseries analysis of -omics data can be carried out by fitting spline curves to the data and using limma for hypothesis testing. The obtained hits can be clustered based on the spline shape and then used for an overrepresentation (ORA) analysis.The R package SplineOmics streamlines this whole process and generates reports
crowdtangle-api-schema
Simple ontological representation of the CrowdTangle API to be used in a Tropy template
statrom
Python code to reproduce the results in our reduced order statFEM paper.
https://github.com/jageo/lobsterautomation
This is a package to reproduce the publication on Lobster automation
mbed-torch-fusion-os
MbedTorch FusionOS: Seamlessly merges Mbed OS with Torch ML models for the P-Nucleo-WB55 on Arm Cortex M4. Empowering edge computing with efficient ML deployment.
https://github.com/jageo/bam-jobflow-tutorial
This is an interactive jobflow tutorial for new users.
kececinumbers
Keçeci Numbers, Keçeci Sayıları, kececinumbers, Keçeci Conjecture
daef
Python language implementation of the Deep Autoencoder for Federated learning (DAEF).