GitHub
fans
FANS: an open-source, efficient, and parallel FFT-based homogenization solver designed to solve microscale multiphysics problems.
classic-synchronizzazion-problems
Classical problems of synchronization using Semaphores and Condition Variables in java.
ug_finalyearproject
Jadavpur University B.E. E.T.C.E. Final Year Project repository
helical
A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
an-empirical-study-of-algebraic-algorithms-in-perfect-matching
Julia implementations of algebraic algorithms in perfect matching
lwt-website
source code for UBCRCC website created using the lab website template
xbcr-net
Code for "Deep learning-based rapid generation of broadly reactive antibodies against SARS-CoV-2 and its Omicron variant" (Cell Research)
lja_python_for_librarians
Instructional material for Library Juice Academy Python For Librarians
giraffe-identification-ai-tool
AI-Driven Vision Tool for Identifying Individual Giraffes
fair-python-cookiecutter-demo
Live demo to demonstrate a repository created from the fair-python-cookiecutter template.
pyloric-network-simulator
Pure-Python, JAX-accelerate implementation of the pyloric circuit model described by Prinz et al (Nat. Neurosci., 2004)
https://github.com/dmetivie/periodichiddenmarkovmodels.jl
Non-homogenous Hidden Markov Models
pyrit
The Python Risk Identification Tool for generative AI (PyRIT) is an open source framework built to empower security professionals and engineers to proactively identify risks in generative AI systems.
avtandil-programming-language
Esoteric programming language adopted to Digital Humanities tasks. Python implementation. 🤖
https://github.com/brainlesion/preprocessing
preprocessing tools for multi-modal 3D brain imaging
https://github.com/dmetivie/pluto_export
Static export of my pluto notebooks and where I store other materials
https://github.com/broadinstitute/seqc_multiqc
Fork of MultiQC from July 2018 for seQuoia bacterial genomics infrastructure.
array_wah
MATLAB tool for evaluating microphone array configurations via 3D localisation metrics. Generates error heatmaps and statistical insights to guide array design in acoustic research.
https://github.com/byuignite/hips
Hierarchical Parcel Swapping turbulence mixing model
https://github.com/caltechlibrary/2020-cpa-shell-git
Workshop website for January 2020 CPA Shell and Git Classes
full-stack-project-acolhe-queer-application
This Full Stack project was developed by my classmates and me as the semester conclusion project at the Puc Minas University. It was developed with C#, HTML, CSS, Java Script and Bootstrap.
control-neuralode
Neural ODEs as Feedback Policies for Nonlinear Optimal Control (IFAC 2023) https://doi.org/10.1016/j.ifacol.2023.10.1248
datafest-quarto
Workshop materials for learning how to build websites with Quarto
https://github.com/camilogarciabotero/bioatomscount.jl
Count organic atoms in a BioSequence
https://github.com/argilla-io/argilla-server
A Python native FastAPI server for the Argilla backend.
tequila_be_mini_backup
A High-Level Abstraction Framework for Quantum Algorithms
nf-crispr-primer-design
Nextflow pipeline for primer design for sequencing CRISPR target sites
location-prediction-on-twitter-using-machine-learning-techniques
This project applies machine learning techniques to predict the geographical location of Twitter users based on tweet content and metadata. It leverages natural language processing and classification models to estimate user locations with improved accuracy. Ask ChatGPT
exaca
Mirror for ExaCA https://github.com/LLNL/ExaCA: cellular automata for alloy nucleation and solidification written with Kokkos
tgt_realtime
Code for real-time processing of shipboard instruments on the R/V Thomas G. Thompson.
https://github.com/dmetivie/abcmethods.jl
A Julia package implementing some Bayesian ABC methods
visualizations_in_r
Introductory lesson on Visualizations in R, built with Carpentries Workbench infracture
https://github.com/choderalab/broad-spectrum-asap-paper
Scripts and input files for structure-based prediction of affinity across the coronavirus family.
https://github.com/dmetivie/lux.jl
Elegant & Performant Scientific Machine Learning in Julia
g.e.v.i.r
This repository is a companion to the research paper *Using Text Embeddings for Deductive Qualitative Research at Scale in Physics Education*, by Tor Ole Odden, Halvor Tyseng, Jonas Timmann Mjaaland, Markus Fleten Kreutzer, and Anders Malthe-Sørenssen at the University of Oslo, Norway.
computing-basics-batch
A tutorial on batch job submission and monitoring for DUNE computing.
https://github.com/dmetivie/hiddenmarkovmodels.jl
A Julia package for simulation, inference and learning of Hidden Markov Models.
