GitHub
nkpc_estimation
Final Project for 'Effective programming practices for economists' (University of Bonn, winter term 22/23)
rcc.billing
Automated, data-driven service billing implemented on REDCap Custodian
floss-toolbox
A toolbox to help developers and open source referents to not waste their time with manual and boring tasks. Provides simple and light tools to make investigations in source code to look for hot data. Provides also primitives to manage GitHub and GitLab organizations.
beyond-the-mirror
Field research exposing how LLM safeguards collapse under polite, persistent interaction. Includes full report, metrics, session logs, and the AION conditioning protocol.
gnn_tracking
Reconstruct billions of particle trajectories with graph neural networks
propulate
Propulate is an asynchronous population-based optimization algorithm and software package for global optimization and hyperparameter search on high-performance computers.
pricepoints
Price Points research, data analyses, and packages. Informational only, not official Turquoise Health products
training-load-review-data
Systematic review of the training load and injury risk field [dataset]
11521-adv-geo-comp
Syllabus and materials for redesigned 11.521, Advanced Geographic Computation for Urban Planning
2025-06-16-strathclyde
Carpentries website for presentation in SIPBS, June 2025
https://github.com/jageo/tutorialatomate2forcefields
Tutorial to learn basic features of atomate2
theodolite
Theodolite is a framework for benchmarking the horizontal and vertical scalability of cloud-native applications.
exam_forecast
Companion analysis to a paper published in the Journal of Digital Imaging.
openmind
I use a simple model to investigate the epistemic value of open-mindedness. This repository contains the code for a model of the epistemic value of open-mindedness and for producing some figures.
https://github.com/jageo/pymatgen
Python Materials Genomics (pymatgen) is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes. It is currently the core analysis code powering the Materials Project.
ramanspec_basicoperations
Procedures (for IgorPro) to perform operations needed in day to day analysis of spectroscopic data. For example, Raman or infrared spectra where the data is structured as array of 1-D or 2-D waves.
architxt
ArchiTXT is an open source Python library that transforms unstructured text into structured, searchable, and AI-ready data. It enables automated database generation and seamless data integration.
cora
Code for simulating skies for 21cm Intensity Mapping, including galactic and extragalactic foregrounds.
gemelos-digitales-proyecto-final-escalante-21212151-
Proyecto Final: Proceso de inflamación (3 poblaciones)
abc
Code accompanying the publication "Enhancing Bacterial Adhesion with Hydro-Softened Chitosan Films"
fastqrepair
A pipeline that can be used to recover corrupted FASTQ.gz files, drop or fix uncompliant reads, remove unpaired reads, and settles reads that became disordered
detaxizer
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
babel
Babel creates cliques of equivalent identifiers across many biomedical vocabularies.
https://github.com/deepset-ai/nvidia-triton-inference
This repository contains setup examples for hosting model inference using NVIDIA triton
reproducible-research-with-gpu-jupyter
This repository demonstrates how to use GPU-Jupyter for reproducible deep learning research with minimal setup effort..
sammyseq
Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.
replicability-presentation-2022
Presentation on Lessons Learned after 1000 articles
splineomics
Timeseries analysis of -omics data can be carried out by fitting spline curves to the data and using limma for hypothesis testing. The obtained hits can be clustered based on the spline shape and then used for an overrepresentation (ORA) analysis.The R package SplineOmics streamlines this whole process and generates reports
https://github.com/deepset-ai/haystack-json-schema
JSON Schema for validating Haystack Pipeline YAML files