GitHub
tutorial-simulations-using-npsim-and-geant4
EIC Tutorial: Simulations using ddsim and Geant4
greatbarrierreefassignment
Here is the repository I used for my DATA3888 Discipline Assignment One
mr.divw
Debiased Inverse-Variance Weighted Estimator in Two-Sample Summary-Data Mendelian Randomization
pygismo
G+Smo (pronounced gismo or gizmo) is a C++ library for isogeometric analysis (IGA). Geometry plus simulation modules aims at the seamless integration of Computer-aided Design (CAD) and Finite Element Analysis (FEA).
https://github.com/ivorytower152/ultralytics
NEW - YOLOv8 🚀 in PyTorch > ONNX > OpenVINO > CoreML > TFLite
nf-fastq2bam
Nextflow pipeline to convert FASTQ files to BAM for WGS and RNA-seq data
sphae
Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
cTMed
Calculates standard errors and confidence intervals for effects in continuous-time mediation models.
octave_php_wrapper
The octave_php_wrapper package creates a PHP wrapper for Octave script, so that you can run the Octave script by PHP, like modern Internet service.
verina
Verina (Verifiable Code Generation Arena) is a high-quality benchmark enabling a comprehensive and modular evaluation of code, specification, and proof generation as well as their compositions.
cardo-handbook
The CaRDO Handbook is designed to make CaRDO accessible to those with little or no R experience. Detailed instructions and methods are provided to enable users to create their own CaRDO interactive dashboard
sec-certs
Tool for analysis of security certificates and their security targets (Common Criteria, NIST FIPS140-2...).
photoperiodlocaladaptation
Scripts for Wang et al. (2017) "A major locus controls local adaptation and adaptive life history variation in a perennial plant". https://www.biorxiv.org/content/early/2017/12/13/178921 https://zenodo.org/badge/100579273.svg
aspenpopulationgenomics
Scripts for Wang et al. (2016) "Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species" Genetics 202, 1185-1200. http://doi.org/10.1534/genetics.115.183152
stableexpression
Pipeline dedicated to finding the most stable genes among a single or multiple expression dataset(s). It is useful in particular for finding the most suitable RT-qPCR reference genes for a specific species.
simpleoctree
An adaptive 2:1 balanced tree for point distributions in 2D and 3D. Written in Python with minimal dependencies.
hydra-scraper
Comprehensive scraper for paginated APIs, RDF, XML, file dumps, and Beacon files
arch2020_aff_re
Repeatability Evaluation package for the ARCH2020 AFF Competition
astro-elisa
Efficient library for spectral analysis in high-energy astrophysics.
bihc
Beam Induced Heating Computation (BIHC) tool allows the estimation of the dissipated power due to the passage of a particle beam inside an accelerator component
2025_cagis_special-issue_article
Repository for our paper entitled: "Reproducible visualization strategies for spatially varying coefficient (SVC) models: Incorporating uncertainty and assessing replicability"
https://github.com/ivorytower152/tuning_playbook
A playbook for systematically maximizing the performance of deep learning models.
tudelft_v3_kite
A data repository containing all relevant analysis and specification of the TUDELFT V3 Leading-Edge-Inflatable kite
costly
Estimate costs of complex LLM workflows in advance before spending money
burgers-vector-calculator
Program that computes Burgers vectors from elastic strain and lattice rotation data
intro-bayesian-statistics-training
SIB course on bayesian statistics with applications using Rstan
anomalydetector
Intelligent Surveillance System Using Motion Anomaly Detection
stats-strided-wasm-dmeanwd
Calculate the arithmetic mean of a double-precision floating-point strided array using Welford's algorithm.
installkernel-wsl
Script and installkernel hook to copy Linux kernel to the host system and update .wslconfig.
fair-convergence-matrix
Basic code to create FAIR convergence matrix from nanodash nanopublications
sequencecomposition
Nextflow DSL2 pipeline to extract statistics from a genome about its sequence composition
neuco-bench
Welcome to NeuCo-Bench, a benchmarking framework for evaluating compressed embeddings on downstream tasks.
pmv-si-2023-2-pe1-t2-house-hero
pmv-si-2023-2-pe1-t2-house-hero created by GitHub Classroom
https://github.com/ivorytower152/denoising-diffusion-pytorch
Implementation of Denoising Diffusion Probabilistic Model in Pytorch
eista
A single-cell spatial transcriptomics pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.
lkfmixer
LKFMixer: Exploring Large Kernel Feature For Efficient Image Super-Resolution
https://github.com/boyle-lab/gpatch-manuscript
Data retrieval and Analysis steps for the GPatch manuscript.
presentation.template
This repository contains latex templates for NumPEx documents
neuropyxels
NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.
ssp-mmc
A Stochastic Shortest Path Algorithm for Optimizing Spaced Repetition Scheduling
recoll
Recoll is a desktop full-text search tool (forked from the original at framagit)