GitHub
annotationpipeline
Annotation of bacterial genomes using Bakta, EggNOG mapper, Cayman and VFDB
stats-array-nanmeanpn
Calculate the arithmetic mean of an array, ignoring NaN values and using a two-pass error correction algorithm.
https://github.com/google-deepmind/ai-safety-gridworlds
This is a suite of reinforcement learning environments illustrating various safety properties of intelligent agents.
degradationrate-and-bvtv
Script for the calculation of the degradation rate and bone volume to total volume (BvTv) of 3D µCT Image Data
infrared-tracking
Infrared tracking w/ YoloV5 for the TII Infrared Tracking Challenge (2023)
https://github.com/google-deepmind/card2code
A code generation dataset for generating the code that implements Hearthstone and Magic The Gathering card effects.
nagios-plugin-powershell-templates
A set of templates for Nagios check scripts written in Powershell.
macro
[ICC '21] MACRO: Megastructure Assembly via Collaborative Robots in Orbits
wolfsoftware.shamir-secret-sharing
A CLI implementation of Shamir's secret sharing.
draw-lines
A bash script that allows you to draw multiple different types of lines on the console.
gfkg-nv
Solutions and miscellaneous notes for "Gauge Fields, Knots and Gravity"
hand_keypoint_detection
For Minotaur.
template-python-project
A baseline for creating python projects for security projects.
https://github.com/google-deepmind/aqua
A algebraic word problem dataset, with multiple choice questions annotated with rationales.
thorimage-sync_2p-analysis
Notebook to analyze ThorImage + ThorSync 2-photon data with light stimulation.
dsa-thrombus-classifier
PoC tool to use CNNs to classify digital subtraction angiography images of the brain into thrombus-free and non-thrombus-free.
shapeseq
[DRAFT] Work-in-progress Nextflow pipeline for processing Shapeseq data based off RNAFramework
team2
This is a project developed by Pratt Institute, School of Information graduate students.
https://github.com/google-deepmind/dm_alchemy
DeepMind Alchemy task environment: a meta-reinforcement learning benchmark
southern_ocean_eddy_subduction
Code used in Chen and Schofield (2024): "Spatial and Seasonal Controls on Eddy Subduction in the Southern Ocean"
abbreviationes
Automated pipeline for expanding medieval Latin abbreviations encoded in TEI using finetuned ByT5. Drop your TEI files, run five scripts, and get a Hugging Face dataset plus a lightweight LoRA adapter for ByT5 that turns graphemic ATR output into expanded text.
historic_pheno_data_analysis
Analysis of wheat and barley historical data from 9 AGENT genebanks.
renku
Renku provides a platform and tools for reproducible and collaborative data analysis.
bash-course
Material for the advanced bash scripting course at Heidelberg University
dynamicalsystemsdocs.jl
Ecosystem-wide docbuild for the DynamicalSystems.jl project using MultiDocumenter.jl
archon-containment-logic
Symbolic containment system for recursive logic traps — ARCHON firewall + audit
software-development-with-llms
Hands-on activities for BSSw tutorial variant which includes the use of LLMs for software development (under development)
psoc-neorv32
NEORV32 fork for the KIT PSoC lab
pre-em-bias
Official implementation of the IEEE Big Data 2024 paper "Evaluating Blocking Biases in Entity Matching"
https://github.com/google-deepmind/dqn
Lua/Torch implementation of DQN (Nature, 2015)
original-file
Simulated Construction of Tilmicosin Nucleic Acid Aptamers Based on Molecular Docking and Molecular Dynamics Techniques
cellgpu
GPU-accelerated simulations of Voronoi and vertex models of cells. Initial version published in Computer Physics Communications: https://doi.org/10.1016/j.cpc.2017.06.001
fast_frechet-python
Comparison of different (fast) discrete Fréchet distance implementations in Python.
carto-lab-docker
A versioned Docker container running a pre-configured JupyterLab for reproducible spatial data science. Officially supported by the Research Data Centre (FDZ) at IOER. This is the community mirror for issues, discussions, and contributions.
mot_with_pmmm
A novel Position and Multi-step Memory Matching (PMMM) module to enhance long-term association accuracy by integrating positional cues with multi-frame historical context.
vmecpp
From-scratch C++ and Python reimplementation of the Variational Moments Equilibrium Code (VMEC).
liibra.jl
Create reduced-order state-space models for lithium-ion batteries utilising realisation algorithms.
prescriptive-study-method
A method to simplify the study process in way to increase the efficiency
rtdetr-mmdet
RT-DETR series algorithms implemented based on MMDetection, including RT-DETR, RT-DETRv2, DFINE, and DEIM.
number-float64-base-ulp-difference
Compute the number of representable double-precision floating-point values that separate two double-precision floating-point numbers along the real number line.
https://github.com/dmijatovic/coursera-webdev-assignment2
Web development course on Coursera by John Hopkins University
modulus
A simple and lightweight cross-platform C++ package manager written in Python and fully based on CMake.
pixelator
Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)
