itwinai • Science 44%

Advanced AI workflows for scientific digital twins

hermes-rheo • Science 49%

Python package designed to complement and extend the piblin library, offering a set of transforms tailored for analysis of rheological data

SatRbedo: An R package for retrieving snow and ice albedo from optical satellite imagery • Science 87%

SatRbedo: An R package for retrieving snow and ice albedo from optical satellite imagery - Published in JOSS (2026)

torch_blue: A Flexible Python Package for Bayesian Neural Networks in PyTorch • Science 87%

torch_blue: A Flexible Python Package for Bayesian Neural Networks in PyTorch - Published in JOSS (2026)

https://github.com/spectralmatch/spectralmatch • Science 49%

Relative radiometric normalization toolkit for raster mosaics and time series

FAIRmaterials: Ontology Tools with Data FAIRification in Development • Science 87%

FAIRmaterials: Ontology Tools with Data FAIRification in Development - Published in JOSS (2026)

tools4rdf • Science 44%

Collection of tools for working with RDF data

$\mathcal{H}$-HIGNN Toolkit: A Software for Efficient and Scalable Simulation of Large-Scale Particulate Suspensions Using GNNs and $\mathcal{H}$-Matrices • Science 90%

$\mathcal{H}$-HIGNN Toolkit: A Software for Efficient and Scalable Simulation of Large-Scale Particulate Suspensions Using GNNs and $\mathcal{H}$-Matrices - Published in JOSS (2026)

aiida-aimall: A Python package for automating workflows for AIMAll software • Science 87%

aiida-aimall: A Python package for automating workflows for AIMAll software - Published in JOSS (2026)

OnlinePCA.jl: A Julia Package for Out-of-core and Sparse Principal Component Analysis • Science 87%

OnlinePCA.jl: A Julia Package for Out-of-core and Sparse Principal Component Analysis - Published in JOSS (2026)

OnlineNMF.jl: A Julia Package for Out-of-core and Sparse Non-negative Matrix Factorization • Science 87%

OnlineNMF.jl: A Julia Package for Out-of-core and Sparse Non-negative Matrix Factorization - Published in JOSS (2026)

Reyna: A minimal overhead polytopal discontinuous Galerkin finite element library • Science 87%

Reyna: A minimal overhead polytopal discontinuous Galerkin finite element library - Published in JOSS (2026)

A Python API for OTTER • Science 87%

A Python API for OTTER - Published in JOSS (2026)

c3dr • Science 67%

Read and write C3D motion capture data in R

rydiqule • Science 75%

Rydberg Sensor Interactive Quantum Physics Module

MieSimulatorGUI: A user-friendly tool to compute and visualize light scattering by spherical dielectric particles • Science 87%

MieSimulatorGUI: A user-friendly tool to compute and visualize light scattering by spherical dielectric particles - Published in JOSS (2026)

Dyad: a binary-star dynamics and statistics library for Python • Science 87%

Dyad: a binary-star dynamics and statistics library for Python - Published in JOSS (2026)

pyfive: A pure-Python HDF5 reader • Science 92%

pyfive: A pure-Python HDF5 reader - Published in JOSS (2026)

r.earthworks • Science 67%

An add-on tool for computational terrain modeling in GRASS

BiGSTARS.jl: A Julia package for bi-global stability analysis for rotating stratified flows • Science 87%

BiGSTARS.jl: A Julia package for bi-global stability analysis for rotating stratified flows - Published in JOSS (2026)

regularizedoptimization.jl • Science 67%

Algorithms for regularized optimization

anvay: A Web-based Tool for Interpretive Topic Modelling in Bengali • Science 87%

anvay: A Web-based Tool for Interpretive Topic Modelling in Bengali - Published in JOSS (2026)

Htool-DDM: A C++ library for parallel solvers and compressed linear systems. • Science 92%

Htool-DDM: A C++ library for parallel solvers and compressed linear systems. - Published in JOSS (2026)

KinOpt: A Python package for chemical kinetics analysis and optimization • Science 87%

KinOpt: A Python package for chemical kinetics analysis and optimization - Published in JOSS (2026)

FluxOptics.jl: A Differentiable Wave Optics Framework for Inverse Design in Julia • Science 87%

FluxOptics.jl: A Differentiable Wave Optics Framework for Inverse Design in Julia - Published in JOSS (2026)

Graphorge: An open-source forge of graph neural networks • Science 87%

Graphorge: An open-source forge of graph neural networks - Published in JOSS (2026)

tangram, an open platform for modular, real-time air traffic management research • Science 96%

tangram, an open platform for modular, real-time air traffic management research - Published in JOSS (2025)

powerfactory-tools • Science 75%

A Python toolbox for the (external) control of DIgSILENT PowerFactory.

rmcmc • Science 57%

Robust Markov chain Monte Carlo methods in R

datatidy24sta5069z • Science 44%

Tidy data for analysis for STA5069Z course

xr_fresh: Automated Time Series Feature Extraction for Remote Sensing & Gridded Data • Science 93%

xr_fresh: Automated Time Series Feature Extraction for Remote Sensing & Gridded Data - Published in JOSS (2025)

SpectralUnmixing • Science 44%

Spectral unmixing, oriented towards imaging spectroscopy data. Lots of flavors included.

MujocoROS2Control: Seamless MuJoCo Integration with ROS 2 for Robot Simulation and Control • Science 87%

MujocoROS2Control: Seamless MuJoCo Integration with ROS 2 for Robot Simulation and Control - Published in JOSS (2025)

MatrixBandwidth • Science 44%

Fast algorithms for matrix bandwidth minimization and matrix bandwidth recognition in Julia.

WorMe: A user-oriented software for <em>Caenorhabditis elegans</em> length determination • Science 87%

WorMe: A user-oriented software for <em>Caenorhabditis elegans</em> length determination - Published in JOSS (2025)

molify: Molecular Structure Interface • Science 87%

molify: Molecular Structure Interface - Published in JOSS (2025)

dispersiveshallowwater.jl • Science 67%

A Julia library of structure-preserving numerical methods for dispersive wave equations

grepq — Peer-reviewed • Science 98%

grepq: A Rust application that quickly filters FASTQ files by matching sequences to a set of regular expressions - Published in JOSS (2025)

gibbonNetR — Peer-reviewed • Science 93%

gibbonNetR: an R Package for the Use of Convolutional Neural Networks for Automated Detection of Acoustic Data - Published in JOSS (2025)

gtexr — Peer-reviewed • Science 98%

gtexr: A convenient R interface to the Genotype-Tissue Expression (GTEx) Portal API - Published in JOSS (2025)

gtk-fortran — Peer-reviewed • Science 54%

gtk-fortran: a GTK+ binding to build Graphical User Interfaces in Fortran - Published in JOSS (2019)

portalcasting — Peer-reviewed • Science 59%

portalcasting: Supporting automated forecasting of rodent populations - Published in JOSS (2022)

Unishox — Peer-reviewed • Science 98%

Unishox: A hybrid encoder for Short Unicode Strings - Published in JOSS (2022)

dataaimsr — Peer-reviewed • Science 93%

dataaimsr: An R Client for the Australian Institute of Marine Science Data Platform API which provides easy access to AIMS Data Platform - Published in JOSS (2021)

chirps — Peer-reviewed • Science 93%

chirps: API Client for the CHIRPS Precipitation Data in R - Published in JOSS (2020)

precisetad • Science 57%

This is a read-only mirror of the git repos at https://bioconductor.org

dlw-yolo • Science 54%

visualwebarena_collector • Science 54%

appredict • Science 44%

Cardiac Action Potential Prediction (ApPredict) under drug-induced block of ion channels. This is a Chaste extension/bolt-on project.

rii-archive • Science 44%

bsprvse • Science 67%

Solve the (ro)vibrational Schödinger Equation with a basis of B-splines, optionally with a complex absorbing potential

yolov5 • Science 54%

yolov5-for-appledetection • Science 54%

yolov5_modified • Science 54%

Some modifications regarding YOLO

parabolictroughcollectorbc • Science 54%

An OpenFOAM's boundary condition for wall of parabolic trough collector.

sfg_upconversion_simulator • Science 44%

Simulates spectral lineshapes in SFG spectroscopy.

yolo • Science 54%

as

coda • Science 44%

Code Analysis Toolkit

yolov5-master • Science 54%

coffee_been_detection • Science 44%

coloringbookproject • Science 44%

Group 6 project

iddconf_epiverse • Science 67%

:package: reproducible code principles

dcbh_relation_lifetime • Science 44%

Using MC merger trees to calculate the expected lifetime for the unique mass relation in DCBH-hosting halos.

https://github.com/datejada/protem • Science 13%

PROTEM PROactive Transmission Expansion Model

chelle-s-family-memories • Science 44%

Chelle's family memories

tiangolo__fastapi • Science 44%

mmrsseg • Science 44%

basicsr_x8 • Science 54%

A modified version

software-in-the-loop-using-genetic-algoritm-and-cst-method-matlab-ansys-coupling- • Science 44%

2024-02_pbe_vbsa • Science 49%

Source code repository accompanying the paper titled "Factor prioritization in FEMA P-58 loss estimation."

napari-manual-registration • Science 44%

rnsurvey_bogota_dataanalysis • Science 44%

daffodil-lib • Science 65%

Library providing both simulated and actual interfaces to NIST's nanodevice characterization system, Daffodil.

wtspublic • Science 67%

Automated Digital Twins for Medicine Dispensers

mmdetection3 • Science 54%

Mmdetection3 fork (3.2 used with SAHI slicing library)

makerbar-workbench • Science 44%

bulkdownloadossdocs • Science 44%

huber-energy-measure-quantization • Science 54%

cfc • Science 54%

Confidence Forced-Choice

brain-connectivity-fmri-resting-state • Science 44%

minrank3 • Science 44%

Computer assisted section for the proof that the Min Rank 3 problem is computationally hard.

sap-automation • Science 44%

hfst-ospell • Science 44%

HFST spell checker library and command line tool

six_gee_toolbox • Science 67%

Toolbox for calculating spring onset using GEE

louvain-communities-dynamic • Science 67%

Comparing static vs dynamic approaches of the Louvain algorithm for community detection.

spi-master-rhs2116 • Science 44%

SPI logic to interface with the RHS2116 chip.

is-string-ascii-es • Science 44%

An ECMAScript (JavaScript & TypeScript) module to determine whether the string is ASCII.

text_to_video_generation • Science 44%

Conditional VAE-GAN for Realistic Text-to-Video Synthesis with Enhanced Temporal Coherence

focus-tracker • Science 44%

A finetuned YOLOv5 model that keeps people off their phone using cool punishments

taskfarm-worker • Science 67%

worker module for taskfarm

autose-hw2-data • Science 67%

spezi • Science 54%

mini-lang • Science 44%

The example mini programming language written for the "Write a language in a week" series.

mo-mst • Science 57%

This repository contains code, computational results, and conference slides related to a new dynamic programming algorithm for the Multiobjective Minimum Spanning Tree problem. The algorithm was developed at the Zuse Institute Berlin and the Universidad de La Laguna. The authors are Pedro Maristany de las Casas, Antonio Sedeño Noda, and Ralf Borndörfer.

nvl-lab.github.io • Science 44%

Source code for the lab website

medical_education • Science 57%

Search strategy and R analysis for bibliometric study of Norwegian medical education research

proteomics-data-analysis-tutorial • Science 44%

A comprehensive tutorial for proteomics data analysis in R that utilizes packages developed by researchers at PNNL and from Bioconductor.

chemfetchtool • Science 67%

ChemFetchTool is a web-based tool employing the PubChem PUG REST API endpoint for automated retrieval of molecular properties given only the compound name(s)

iris • Science 44%

Iris - P2P System for Confidential Sharing of Threat Intelligence and Collaborative Defense for Slips

gstkalman • Science 44%

GStreamer Kalman Filter Video Plugin