GitHub
https://github.com/ambco-iscte/jask
A Library for Generating Questions about Learners' Code in Java
genotyping-array-qc
Nextflow pipeline for quality control of genotyping data based on arrays.
https://github.com/annahedstroem/sanity-checks-revisited
[NeurIPS XAIA & Springer] Code and notebooks to paper "A Fresh Look at Sanity Checks for Saliency Maps"
https://github.com/anon0411/decoh_as_codom
Feedback-guided quantum circuits exploring codomain-zero as a structural condition. 구조 형성의 조건으로서 공역 0을 실험하는 피드백 기반 양자 회로.
https://github.com/aria-systems-group/regret_synthesis_toolbox
Source code for Regret synthesis for two-player turn-based game played on graphs - ICRA 22
https://github.com/arkokupski-wat/modified-spacetime-hypothesis
The hypothesis treats spacetime not as a passive backdrop for matter, but as an equal partner in physical transformations. The inspiration stems from explosive chemistry—specifically, how the detonation of high-energy materials mixtures) converts condensed matter into expanding gases and energy.
https://github.com/arkokupski-wat/g1g2-gravity-duality
🌌 G₁/G₂ Gravity Duality: Proves quantum & cosmic gravity are distinct phenomena.
https://github.com/arkokupski-wat/hypothesis-of-spontaneous-matter-antimatter-conversion
Hypothesis of Spontaneous Matter→Antimatter Conversion at Planck Densities
https://github.com/arkokupski-wat/subjective_time_as_emergent_information_processing
The Brain's Clock: From the Phoenix Equation to Holographic Consciousness
https://github.com/chen-yang-liu/awesome-change-captioning
🔥Collection of resources and papers
https://github.com/chen-yang-liu/git-rsclip
Git-RSCLIP pre-trained on 10 million Remote sensing image-text pairs
https://github.com/assert-kth/vrepair
open science repo of "Neural Transfer Learning for Repairing Security Vulnerabilities in C Code" https://arxiv.org/pdf/2104.08308
https://github.com/astrazeneca/topmodel
Uses simulated time-to-event data to model efficacy by prevalence-adjusted nAb titres using a time-varying Cox model.
https://github.com/auroradysis/kerrp2p
KerrP2P is a software designed for forward ray tracing in Kerr spacetime. It is specifically tailored to efficiently calculate multiple null geodesics between designated "source" and "observer" points, locate apparent positions of the corresponding images, and quantify their shapes.
https://github.com/awesomecosmos/aayushi-verma-cv
Aayushi Verma's Curriculum Vitae.
https://github.com/baltic-coastal-monitoring-team/geopoint
GeoPOINT – Synthetic Point Generator for Geospatial Applications
array-base-broadcasted-ternary3d
Apply a ternary callback to elements in three broadcasted input arrays and assign results to elements in a three-dimensional nested output array.
https://github.com/bblodfon/pdac-efs-bench2024
Feature Selection benchmark and analysis on multi-omics PDAC datasets
https://github.com/benny0323/deep-learning-based-mia-tasks
⭐[A Deep Survey] Paper List For Metal Artifact Reduction including traditional and deepl leanring based methods. ℱℯℯ𝓁 𝒻𝓇ℯℯ to contribute!
https://github.com/berenslab/llm-excess-vocab
Delving into LLM-assisted writing in biomedical publications through excess vocabulary
https://github.com/bin-cao/shapev
[JMI 2022 | Aggregate 2025] A package for searching equivalent values based on joined SHAP values
https://github.com/bio-rsg/oceancolour
Package of custom functions for remote sensing data analysis
https://github.com/bioconductor/bioconductor-training
Bioconductor teaching and education committee
https://github.com/biodataanalysisgroup/virtual-tutorial-perturbation-modelling
https://github.com/bioinfomachinelearning/multicom4
The MULTICOM4 protein structure prediction system developed by the Bioinformatics and Machine Learning Lab at the University of Missouri - Columbia
https://github.com/biolink/resource-ingest-guide-schema
A LinkML schema for describing the scope, rationale, and modeling approach for ingesting content from a single source.
https://github.com/bioscan-ml/barcodebert
A pre-trained representation from a transformers model for inference on insect DNA barcoding data.
https://github.com/bodenmillergroup/imcdataanalysis
R based workflow for multiplexed imaging data
https://github.com/boothgroup/vayesta
A Python package for wave function-based quantum embedding
https://github.com/bootphon/speech-map
Mean Average Precision over words or n-grams with speech features
citation_normalisation
The goal of this repository is to create a tool that creates a normalised citation output based on any identifier that directs to a publication. The idea is to gather information using different freely available APIs.
https://github.com/bozenne/article-netbenefit-correction
Code and software for the article "Correcting the bias of the net benefit estimator due to right-censored observations" published in biometrical (link: https://doi.org/10.1002/bimj.202000001 ).
https://github.com/brainets/hosi_infogain
Script for "Higher-order and distributed synergistic functional interactions encode information gain in goal-directed learning"
https://github.com/brainglobe/brainglobe-template-builder
Build unbiased anatomical templates from individual images
desirna
State of the art software for RNA sequence design. The first to solve the Eterna benchmark!
https://github.com/broadinstitute/profiling-resistance-mechanisms
Predicting pharmacodynamic responses to cancer drugs using cell morphology
https://github.com/broadinstitute/pbs-analysis
Scripts for analyzing ChIP-seq and related datatypes with binning and PBS
https://github.com/brugr9/uepluginvolumecreator
Unreal Engine Plugin: Volume Creator – Documentation
https://github.com/bueler/glacier-fe-estimate
extend the Falk technique to Stokes glacier models of surface evolution
https://github.com/cair/tsetlinmachine
Code and datasets for the Tsetlin Machine
https://github.com/caltechlibrary/2020-05-11-swc-online
May 2020 Software Carpentry Workshop
https://github.com/camilogarciabotero/biovossencoder.jl
A small Julia package to represent BioSequences as a Voss matrix
https://github.com/cdcgov/irma
IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.
https://github.com/ceed/nekrs
Mirror of NekRS - GPU-oriented version of Nek5000. Please use the official repository, https://github.com/Nek5000/nekRS, to create issues and pull requests.
https://github.com/centre-for-humanities-computing/llm-tweet-classification
Classifying tweets with large language models with zero- and few-shot learning.
https://github.com/cgeoga/vecchia.jl
Vecchia approximations for Gaussian log-likelihoods
https://github.com/ch-earth/openfews
Open and Shareable Delft-FEWS configuration for connecting the Next Generation of Forecasting Tools
https://github.com/chakravala/staticvectors.jl
Statically sized tuple vectors for Julia
https://github.com/cidgoh/nf-ncov-voc
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 or Mpox genomes. Workflow is developed in collaboration with VIRUS-MVP (https://github.com/cidgoh/VIRUS-MVP) which can be used to visualize the mutation profiles and functional annotations.
https://github.com/climate-service-center/dacstore
Acceptance analysis DACStorE
https://github.com/climatecompatiblegrowth/geo-x-data-prep
Spatial data preparation tools for GeoH2 users.
https://github.com/cmendl/rqcopt_hpc
HPC implementation of Riemannian quantum circuit optimization
https://github.com/coderefinery/testing
Automated testing - Preventing yourself and others from breaking your functioning code
https://github.com/coin-or/symphony
SYMPHONY is an open-source solver, callable library, and development framework for mixed-integer linear programs (MILPs) written in C with a number of unique features
https://github.com/comp-physics/meshfreetrixi.jl
Meshfree extension to Trixi using RBF-based numerics
https://github.com/compiler-campusminden/cpl-vorlesung-master-w25
Lecture "Concepts of Programming Languages" (M.Sc.) (Winter 2025/26)
https://github.com/computational-biology-aachen/synechocystis-photosynthesis-2024
A mathematical model of photosynthetic electron transport in Synechocystis sp. PCC 6803
https://github.com/corybrunson/ordr
manage ordinations and render biplots in a tidyverse workflow
https://github.com/cosbidev/ostransformer
Official implementation for the paper ``A Deep Learning Approach for Overall Survival Prediction in Lung Cancer with Missing Values´´
https://github.com/cosmo-pop/flowfusion
Generative modelling using diffusion models and flow-matching
https://github.com/crsu-apps/popviz
A visualisation package to show absolute effects as a proportion of people
https://github.com/csinva/clinical-rule-development
Building and vetting clinical decision rules.
https://github.com/ctu-vras/monoforce
[IROS 2024] [ICML 2024 Workshop Differentiable Almost Everything] MonoForce: Learnable Image-conditioned Physics Engine