GitHub
datawolf
An open source scientific workflow system that simplifies the integration of data and modeling tools to support research and enable cross disciplinary integration to produce targeted outputs that address particular engineering and educational needs.
tsplit
Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons.
intersect-sdk
Interconnected Science Ecosystem - Software Development Kit (INTERSECT-SDK)
2019-05-01-genentech
Website for May 1st and 2nd Genentech SWC Python workshop.
computing-basics-larsoft
This site offers training for the LArSoft software used by the DUNE.
simple-linear-regression-public-health
Simple linear regression for public health
https://github.com/alrobles/plus
Positive and unlabeled Learning from Unbalanced cases and Sparse structures
ldos-bound-halfspace
Computes finite bandwidth bounds on photonic local density of states maximization via material structuring given a semi-infite halfspace design region
galactipy
Expand your project structure from atoms of code to galactic dimensions. 🌌
metagenomicspipeline
shotgun metagenomics pipeline to obtain relative abundances and pathway abundances
taxonopy
A Python package for efficiently aligning organismal taxonomic hierarchies using the Global Names Verifier
hibridon
Hibridon is a program package to solve the close-coupled equations which occur in the quantum treatment of inelastic atomic and molecular collisions. Gas-phase scattering, photodissociation, collisions of atoms and/or molecules with flat surfaces, and bound states of weakly-bound complexes can be treated
visualisingattentionmapsvqa
Website where I demonstrate different methods of visualising different attention maps as evidence for Visual Question Answering
@effekt-lang/effekt
A language with lexical effect handlers and lightweight effect polymorphism
stats-strided-dsmeanpw
Calculate the arithmetic mean of a single-precision floating-point strided array using pairwise summation with extended accumulation and returning an extended precision result.
stats-strided-dsem
Calculate the standard error of the mean for a double-precision floating-point strided array.
science-impacts-industry
Science Impacts Industry: Investigating the Relationship Between Scientific Advancements and Industrial Funding
3dobjectreconstruction
3D Object Reconstruction project is a workflow that takes a set of stereo images and camera info and outputs a textured mesh (i.e., .OBJ file). The purpose is to translate physical items into the digital world in a photorealistic way
parsnips
Generate, search, and cite SWHIDs for Python code fragments like classes, functions, and expressions.
domino
A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware that an improved package, dominoSignal, is available.
eplant_plant_efp
A data visualization tool to display tissue expression data for Arabidopsis thaliana
ananta-theory
A symbolic and falsifiable cosmology exploring time emergence, coherence, and fractal intelligence.
stats-incr-nanstdev
Compute a corrected sample standard deviation incrementally, ignoring NaN values.
gutanalysistoolbox
Analysis and characterisation of cells within the gut wall using deep learning models. The current focus is on studying enteric neurons and enteric glia.
nestedsamplers.jl
Implementations of single and multi-ellipsoid nested sampling
popglen
Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using ANGSD and related softwares. Flexible to datasets that combine high/low coverage and historical/fresh samples.
nf-core-rnaseqdge
example nextflow pipeline with nf-core modules: RNA-seq and differential gene expression analysis
ruvpy
Reference implementation of the Relative Utility Value metric for forecast value assessment
merge_open_hospital_data
A repository to keep track of the merging of open health facility data for the afrimapr and covidza projects
scientific_research_scraper
[Python] Scraping tool for multiple databases using api's and ChromeDriver.
mrmagpie
The package provides cellular magpie related data via the madrat framework.
sus-analysis-toolkit
A web-based analysis toolkit for the System Usability Scale providing calculation, plotting, interpretation and contextualization utility.
spark-dynamic-executor-time-prediction
Neural Network Models for Predicting Execution Time with Dynamic Executor Allocation in Apache Spark.
sparseposer
Official Code for ACM Transactions on Graphics (TOG) paper "SparsePoser: Real-time Full-body Motion Reconstruction from Sparse Data"
hmm_kunitz_domain
Hidden Markov Model-based classification and structural validation of Kunitz-type protein domains. Includes sequence alignment, model training, validation on curated datasets, and structural quality assessment using PDBeFold and RMSD/Q-score analysis. Final project for the Laboratory of Bioinformatics 1 course at the University of Bologna.
bit_vector
Fast and highly tuned bit vector implementation including space efficient rank and select support having only 3.51% space overhead.
digitising-museum-specimens-tests
A set of scripts to test connectivity and speed to Azure storage
