GitHub
dsa-thrombus-classifier
PoC tool to use CNNs to classify digital subtraction angiography images of the brain into thrombus-free and non-thrombus-free.
h3_indicators
Notebooks and documentation about computing H3 biodiversity indicators
shapeseq
[DRAFT] Work-in-progress Nextflow pipeline for processing Shapeseq data based off RNAFramework
team2
This is a project developed by Pratt Institute, School of Information graduate students.
https://github.com/google-deepmind/dm_alchemy
DeepMind Alchemy task environment: a meta-reinforcement learning benchmark
southern_ocean_eddy_subduction
Code used in Chen and Schofield (2024): "Spatial and Seasonal Controls on Eddy Subduction in the Southern Ocean"
abbreviationes
Automated pipeline for expanding medieval Latin abbreviations encoded in TEI using finetuned ByT5. Drop your TEI files, run five scripts, and get a Hugging Face dataset plus a lightweight LoRA adapter for ByT5 that turns graphemic ATR output into expanded text.
historic_pheno_data_analysis
Analysis of wheat and barley historical data from 9 AGENT genebanks.
selenium-examples-using-rust
Selenium browser automation examples using Rust programming
renku
Renku provides a platform and tools for reproducible and collaborative data analysis.
bash-course
Material for the advanced bash scripting course at Heidelberg University
dynamicalsystemsdocs.jl
Ecosystem-wide docbuild for the DynamicalSystems.jl project using MultiDocumenter.jl
archon-containment-logic
Symbolic containment system for recursive logic traps — ARCHON firewall + audit
software-development-with-llms
Hands-on activities for BSSw tutorial variant which includes the use of LLMs for software development (under development)
psoc-neorv32
NEORV32 fork for the KIT PSoC lab
pre-em-bias
Official implementation of the IEEE Big Data 2024 paper "Evaluating Blocking Biases in Entity Matching"
https://github.com/google-deepmind/dqn
Lua/Torch implementation of DQN (Nature, 2015)
vcf-reformatter
🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format with intelligent transcript handling.
original-file
Simulated Construction of Tilmicosin Nucleic Acid Aptamers Based on Molecular Docking and Molecular Dynamics Techniques
cellgpu
GPU-accelerated simulations of Voronoi and vertex models of cells. Initial version published in Computer Physics Communications: https://doi.org/10.1016/j.cpc.2017.06.001
fast_frechet-python
Comparison of different (fast) discrete Fréchet distance implementations in Python.
carto-lab-docker
A versioned Docker container running a pre-configured JupyterLab for reproducible spatial data science. Officially supported by the Research Data Centre (FDZ) at IOER. This is the community mirror for issues, discussions, and contributions.
mot_with_pmmm
A novel Position and Multi-step Memory Matching (PMMM) module to enhance long-term association accuracy by integrating positional cues with multi-frame historical context.
vmecpp
From-scratch C++ and Python reimplementation of the Variational Moments Equilibrium Code (VMEC).
liibra.jl
Create reduced-order state-space models for lithium-ion batteries utilising realisation algorithms.
prescriptive-study-method
A method to simplify the study process in way to increase the efficiency
ExtendedRtIrtModeling
Extended Response Time Item Response Models with Polya-Gamma Sampler and Bayesian Quantile Regression.
rtdetr-mmdet
RT-DETR series algorithms implemented based on MMDetection, including RT-DETR, RT-DETRv2, DFINE, and DEIM.
number-float64-base-ulp-difference
Compute the number of representable double-precision floating-point values that separate two double-precision floating-point numbers along the real number line.
https://github.com/dmijatovic/coursera-webdev-assignment2
Web development course on Coursera by John Hopkins University
MDL Suite
MDL Suite: A language, generator and compiler for describing mazes - Published in JOSS (2020)
diffmethseq
A NextFlow pipeline to perform differential methylation analysis from bismark-aligned files
modulus
A simple and lightweight cross-platform C++ package manager written in Python and fully based on CMake.
pixelator
Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)
claim_similarity_retrieval
This method enables the retrieval of fact-checked claims or statements to analyze online discourse and social media posts.
stats-array-nanmskmax
Calculate the maximum value of an array according to a mask, ignoring NaN values.
https://github.com/dmijatovic/todo_dp_test
Todo deadpool tokio queries for bench apps
github-inspector
A Python script that connects to your GitHub account using a personal access token (PAT), verifies authentication, and inspects the structure and contents of a specified repository.
pomerol2triqs
Quick and dirty TRIQS wrapper around the Pomerol exact diagonalization library
@hugoalh/base16
An ECMAScript (JavaScript & TypeScript) module for Base16 encode and decode.
count_execution_time_classic_asp
Class to count the execution time of a part of script.
travelling_wave_transition_turbulence_pipe_flow
Master Thesis TUM - Travelling waves in transition to turbulence: a multiscale dynamics approach
ml-unsupervised
Supporting course materials for the Applied Unsupervised Machine Learning course
