GitHub
trex
Simultaneous lineage TRacking and EXpression profiling of single cells using RNA-seq
fish-on-mobile-cameras
Deep learning training configuration files for: Fish surveys on the move: automated fish counts from mobile cameras
trilomorph
a dynamic and collaborative database for the morpho-geometric information of trilobites
geolocator
Facilitate the creation, use, and sharing of your geolocator datapackage
rgi
Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
https://github.com/distancedevelopment/cameratrap_shiny
Camera trap shiny app for obtaining activity multiplier and bootstrap values
vizchemoton
Visualization of the reaction networks from Chemoton, including networks, energies, molecular models and profiles, based in Bokeh
https://github.com/distancedevelopment/online-course
2024 introductory online workshop
physics.net.mathematics
Mathematics.NET is a C# class library that provides tools for solving advanced mathematical problems.
googlefindmytools
Framework for tracking and building your own Google Find My Device / Find Hub trackers 🧭
stats-strided-sstdev
Calculate the standard deviation of a single-precision floating-point strided array.
stats-strided-svariancetk
Calculate the variance of a single-precision floating-point strided array using a one-pass textbook algorithm.
SparseGridsKit.jl: Adaptive single- and multi-fidelity sparse grid approximation in Julia
SparseGridsKit.jl: Adaptive single- and multi-fidelity sparse grid approximation in Julia - Published in JOSS (2025)
sgp
Functions to calculate student growth percentiles and percentile growth projections/trajectories for students using large scale, longitudinal assessment data. Functions use quantile regression to estimate the conditional density associated with each student's achievement history. Percentile growth projections/trajectories are calculated using the coefficient matrices derived from the quantile regression analyses and specify what percentile growth is required for students to reach future achievement targets.
qc.covid_data
This repository contains two databases (daily and weekly) on the management of the COVID-19 pandemic in Quebec. The data were collected/produced by the research team of Prof. Éric Montpetit as part of a research project on the public policies implemented during the pandemic.
llama
Evolutionary Algorithm that uses a double linked-list chromosome to cluster networks
tubecleanr
(Mini) R package for preprocessing YouTube comment data collected with tuber or vosonSML
port-of-mars-analysis
R analysis pipeline for Port of Mars "Mars Madness" tournaments
sat-ds
The official repository to build SAT-DS, a medical data collection of over 72 public segmentation datasets, contains over 22K 3D images, 302K segmentation masks and 497 classes from 3 different modalities (MRI, CT, PET) and 8 human body regions.
appeears-data-resources
This repository provides resources and tutorials to help users work with AppEEARS programmatically.
demgen
This code aims to achieve a standardized particle packing generation framework for granular materials.
pyeugene
Simple python version of EUGEN program, as described by Izgorodina et al (DOI: 10.1021/cg900656z)
happypose
Toolbox and trackers for object pose-estimation. Based on the work CosyPose and MegaPose
https://github.com/biomeds/python_course_ws24
Programming with Python course for master biosciences at the University of Würzburg (winter semester 24/25)
pace_oci_l2_to_l3
Tutorial for using NASA's SeaDAS to convert PACE OCI L2 surface reflectance to L3 data
matilda_online
Cloud-based Workflow for Modeling Water Resources in Glacierized Catchments (MATILDA)
deeptsf
The DeepTSF time series forecasting repository developed by EPU NTUA within the DeployAI project
ebird-api-data
eBird API Data is a reusable Django app for loading data from eBird into a database.
code-quality-security-audit-system-ai-agent
The Code Quality & Security Audit System is a Python-based tool designed to analyze codebases for security vulnerabilities and quality issues.
pedro
Application to process data outputted by various equipment at the Wetlands Soils and Greenhouse Gas Exchange Lab.
ti-2-morada
Projeto da disciplina Trabalho Interdisciplinar: Aplicações para Processos de Negócios do 2º período do curso de Engenharia de Software da PUC Minas.
