GitHub
https://github.com/jcj7292/mda-cnn
Paper https://www.sciencedirect.com/science/article/pii/S0045782521007015
https://github.com/jclutch/system-design-primer
Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.
https://github.com/jcmcnch/global-rrna-univeral-metabarcoding-of-plankton
A central repository for the GRUMP (Global rRNA Universal Metabarcoding of Plankton) dataset, containing scripts for bioinformatic processing and retrieval of associated physical / geochemical measurements from publicly available data.
https://github.com/hbpmedical/heatmaply
Interactive Heat Maps for R Using plotly
https://github.com/jcmgray/abeliantensors
A library for Abelian symmetry preserving tensors in Python 3
https://github.com/jcmgray/opt_einsum_samples
Tensor network sample contractions in JSON format for testing opt_einsum.
https://github.com/hbrown18/e3sm
Energy Exascale Earth System Model source code.
https://github.com/hcdenbakker/seqsero
Salmonella serotyping from genome sequencing data
https://github.com/hcdenbakker/clonalframeml
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
ml4gw
Torch utilities for doing machine learning in gravitational wave physics
https://github.com/jcmgray/numpy
The fundamental package for scientific computing with Python.
https://github.com/jcmgray/proggyleg
Cumulative points and other progress plots for the premier league
https://github.com/jcmontesherrera/jcmontesherrera
Config files for my GitHub profile.
https://github.com/jcmontesherrera/coralline-algae-vis-spectra
The VIS-spectra of the Antarctic coralline algae T. antarcticum: Coupling hyperspectral imaging with standard pigment and DNA tools
https://github.com/hcdp/ascdp
American Samoa Climate Data Portal web application
https://github.com/jcmontesherrera/tern-dronescape
General protocols and checklists for drone imagery and point cloud collection used for TERN's Dronescape and Naturescan projects.
https://github.com/jcmontesherrera/jcmh-phd-thesis-notebooks
Notebooks and scripts created during the course of PhD research chapters.
https://github.com/hcdp/hcdp
HCDP application for dissemination and visualizing climate data for the state of Hawai
https://github.com/hcdp/loggernet_station_data
Station metadata and conversion tables
https://github.com/hcdp/mesonet_station_parser
Code for parsing mesonet loggernet files into Tapis stream
https://github.com/hcdp/preliminary_ignition_probability_predictions
Workflow for creating ignition probability future prediction maps
https://github.com/hcdp/hcdp_file_explorer
a simple file explorer for HCDP data
https://github.com/hcdp/batch_run_workflows
Scripts to batch run HCDP workflow processes
https://github.com/cinrc/a-beluga-formalization-of-ccskp
Artifact for the paper "A Formalization of the Reversible Concurrent Calculus CCSKP in Beluga"
https://github.com/hcdp/mesonet_flags_container
A container for creating mesonet flags
https://github.com/hcdp/mesonet-tapis-ui
Tapis UI customized for mesonet/station display of data
https://github.com/hcdp/demo-container
A simple demo container for the Nov 17 2023 containerization training.
https://github.com/hcdp/timeseries_gen
Create timeseries docs for virtual stations
https://github.com/hcdp/metadata_updater
Container and abaco setup for metadata updates using github webhooks
https://github.com/hci-lab-ugspeechdata/banga_audio_transcription_app
App for Banga audio and Transcription
https://github.com/allfed/pytradeshifts
Contains code and documentation for the pytradeshifts model
https://github.com/hci-lab-um/gleyed-ahead
Gleyed-ahead - swipe-typing for eye-based interaction with type ahead functionality
https://github.com/hcigroupkonstanz/re-locations
Re-locations: Augmenting Personal and Shared Workspaces to Support Remote Collaboration in Incongruent Spaces
https://github.com/hcigroupkonstanz/around-the-smartphone
ARound the Smartphone: Investigating the Effects of Virtually-Extended Display Size on Spatial Memory
https://github.com/hcmlab/nova
NOVA is a tool for annotating and analyzing behaviours in social interactions. It supports Annotators using Machine Learning already during the coding process. Further it features both, discrete labels and continuous scores and a visuzalization of streams recorded with the SSI Framework.
https://github.com/hcmlab/facemesheditor
An Editor to manually adjust automatic Face Mesh Detections
targets-uahpc
A template repository with instructions on how to run a targets workflow using the UAz cluster
bigdata-corp-api
Python API to facilitate interaction with BigDataCorp end-points
stats-base-dists-planck-logcdf
Evaluate the logarithm of cumulative distribution function (CDF) for a Planck (discrete exponential) distribution.
measure-traces
Repo for measuring (Internet) traces. Evaluate micro-batching in data stream processing and the impact of a batch loss on Count-Min Sketch estimation error.
cardiomechanics
Finite element framework for cardiac electromechanics problems
openvqe
Quantum computing algorithms and applications package. Please check our article https://doi.org/10.1002/wcms.1664. Do you want to contribute? Fork the project, create a pull request directed to the alpha branch of the repo.
gptopus
🐙GPTopus is a decoder-only transformer that generates new text based on input text
cpp-struct-byte-order-converter
⚒ A PowerShell script used to generate byte reversing functions for a C/C++ structure.（用于为C/C++结构体生成字节序翻转函数的PowerShell脚本。）
rosettacots
R-package for quantitative translation between COTS measurement tools
ppesage
Simplified Additive Gaussian process Emulator (sage) for climate model PPEs
aem-v2
AEM-Automated Electromagnetic MKID Simulations. MATLAB application used for the automated construction and design of MKID pixels in Sonnet to match specific resonant frequencies and Qc valued. This is the latest version of AEM and works with Sonnet version 18.
python-attrs
This is frozen/no-commits mirror of the https://github.com/python-attrs/attrs.git
confocal_z-stack_analysis
Imaging experiments in Biology often involve the acquisition of confocal z-stack images to quantify fluorescent signal in a biological sample. These z-stacks are usually analyzed using open-source programs such as FIJI, which are notoriously frustrating to work with, and do not facility intuitive high-throughput analysis of many images at once. Manual image analysis is labor-intensive, time-consuming, and prone to human error. I compiled two notebooks to streamline two of the most commonly performed tasks in the analysis of confocal z-stack images: the generation of "pretty" maximum projections, and the analysis of pixel values/ fluorescence from sum projections.
board-game-archive
This collection contains images of tabletop games and the components necessary to play them. It is intended to provide descriptive information about various tabletop games and to inventory their components in the case of loss, damage, repair, or replacement.
delicoco-ieee-transactions
In compressed decentralized optimization settings, there are benefits to having multiple gossip steps between subsequent gradient iterations, even when the cost of doing so is appropriately accounted for e.g. by means of reducing the precision of compressed information.
modern-dgf
An open modern comprehensive, auditable science data management and governance framework aligned with policy guidelines as well as community best practices. The framework provides requirements as well as management tasks that can be customized for each new project.
neonutilities
Repository for Python package containing data-wrangling utilities for working with NEON data.
https://github.com/amalan-constat/needs4bigdata
R package implementing subsampling methods to find informative samples from big data
bayesian-optimization-1d-csnn
Source code of the paper entitled "Improving Fraud Detection with 1D-Convolutional Spiking Neural Networks through Bayesian Optimization", and presented at EPIA 2024, the 23rd International Conference on Artificial Intelligence.
