GitHub
https://github.com/bioconductor/bioconductor-training
Bioconductor teaching and education committee
https://github.com/bio-rsg/oceancolour
Package of custom functions for remote sensing data analysis
https://github.com/bin-cao/shapev
[JMI 2022 | Aggregate 2025] A package for searching equivalent values based on joined SHAP values
https://github.com/berenslab/llm-excess-vocab
Delving into LLM-assisted writing in biomedical publications through excess vocabulary
https://github.com/benny0323/deep-learning-based-mia-tasks
⭐[A Deep Survey] Paper List For Metal Artifact Reduction including traditional and deepl leanring based methods. ℱℯℯ𝓁 𝒻𝓇ℯℯ to contribute!
https://github.com/bblodfon/pdac-efs-bench2024
Feature Selection benchmark and analysis on multi-omics PDAC datasets
https://github.com/baltic-coastal-monitoring-team/geopoint
GeoPOINT – Synthetic Point Generator for Geospatial Applications
https://github.com/awesomecosmos/aayushi-verma-cv
Aayushi Verma's Curriculum Vitae.
https://github.com/auroradysis/kerrp2p
KerrP2P is a software designed for forward ray tracing in Kerr spacetime. It is specifically tailored to efficiently calculate multiple null geodesics between designated "source" and "observer" points, locate apparent positions of the corresponding images, and quantify their shapes.
https://github.com/astrazeneca/topmodel
Uses simulated time-to-event data to model efficacy by prevalence-adjusted nAb titres using a time-varying Cox model.
hotsub
hotsub: A batch job engine for cloud services with ETL framework - Published in JOSS (2018)
https://github.com/assert-kth/vrepair
open science repo of "Neural Transfer Learning for Repairing Security Vulnerabilities in C Code" https://arxiv.org/pdf/2104.08308
survxai
survxai: an R package for structure-agnostic explanations of survival models - Published in JOSS (2018)
https://github.com/chen-yang-liu/git-rsclip
Git-RSCLIP pre-trained on 10 million Remote sensing image-text pairs
https://github.com/chen-yang-liu/awesome-change-captioning
🔥Collection of resources and papers
https://github.com/arkokupski-wat/subjective_time_as_emergent_information_processing
The Brain's Clock: From the Phoenix Equation to Holographic Consciousness
bem
bem: modeling for neutron Bragg-edge imaging - Published in JOSS (2018)
https://github.com/arkokupski-wat/hypothesis-of-spontaneous-matter-antimatter-conversion
Hypothesis of Spontaneous Matter→Antimatter Conversion at Planck Densities
https://github.com/arkokupski-wat/g1g2-gravity-duality
🌌 G₁/G₂ Gravity Duality: Proves quantum & cosmic gravity are distinct phenomena.
https://github.com/arkokupski-wat/modified-spacetime-hypothesis
The hypothesis treats spacetime not as a passive backdrop for matter, but as an equal partner in physical transformations. The inspiration stems from explosive chemistry—specifically, how the detonation of high-energy materials mixtures) converts condensed matter into expanding gases and energy.
https://github.com/aria-systems-group/regret_synthesis_toolbox
Source code for Regret synthesis for two-player turn-based game played on graphs - ICRA 22
GrainSizeTools
GrainSizeTools: a Python script for grain size analysis and paleopiezometry based on grain size - Published in JOSS (2018)
https://github.com/anon0411/decoh_as_codom
Feedback-guided quantum circuits exploring codomain-zero as a structural condition. 구조 형성의 조건으로서 공역 0을 실험하는 피드백 기반 양자 회로.
https://github.com/annahedstroem/sanity-checks-revisited
[NeurIPS XAIA & Springer] Code and notebooks to paper "A Fresh Look at Sanity Checks for Saliency Maps"
https://github.com/ambco-iscte/jask
A Library for Generating Questions about Learners' Code in Java
GEM
GEM: A Python package for graph embedding methods - Published in JOSS (2018)
Combining a Probability and a Non-Probability Sample in a Capture-Recapture Setting
Combining a Probability and a Non-Probability Sample in a Capture-Recapture Setting - Published in JOSS (2018)
https://github.com/aloncrack7/data-degradation-detector
Library to make stimations on data degradation
Limbo
Limbo: A Flexible High-performance Library for Gaussian Processes modeling and Data-Efficient Optimization - Published in JOSS (2018)
https://github.com/aksw/frankgraphbench
The FranKGraphBench is a Framework to allow KG Aware RSs to be benchmarked in a reproducible and easy to implement manner. It was first created on Google Summer of Code 2023 for Data Integration between DBpedia and some standard RS datasets in a reproducible framework.
https://github.com/aiformedresearch/synthetic_images_metrics_toolkit
SIM Toolkit: 2D and 3D synthetic image quality assessment using quantitative and qualitative metrics.
https://github.com/ai4bharat/fbi
FBI: Finding Blindspots in LLM Evaluations with Interpretable Checklists
CLIMLAB
CLIMLAB: a Python toolkit for interactive, process-oriented climate modeling - Published in JOSS (2018)
https://github.com/agroboticsresearch/headland_trajectory_planning
This repo is includes headland space modeling and trajectory planning for autonomous agricultural vehicle in the orchard.
https://github.com/agda/agda2lambox
Compiling Agda's internal syntax to λ-box terms.
TSrepr R package
TSrepr R package: Time Series Representations - Published in JOSS (2018)
Gramm
Gramm: grammar of graphics plotting in Matlab - Published in JOSS (2018)
GIBBON
GIBBON: The Geometry and Image-Based Bioengineering add-On - Published in JOSS (2018)
https://github.com/adicksonlab/agdiff
Implementation of AGDIFF: Attention-Enhanced Diffusion for Molecular Geometry Prediction
https://github.com/adaptivemotorcontrollab/cellseg3d
A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
https://github.com/abhishektiwari/scholarimpact
ScholarImpact: A bibliometric tool to analyse, visualise, and share your research impact, output and scholarly influence using Google Scholar and OpenAlex data.
https://github.com/robelgium/msnoise
A Python Package for Monitoring Seismic Velocity Changes using Ambient Seismic Noise | http://www.msnoise.org
https://github.com/kmnhan/erlabpy
Complete python workflow for Angle-Resolved Photoemission Spectroscopy (ARPES)
https://github.com/openchemistry/tomviz
Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data
https://github.com/patrickzib/dictionary
WEASEL 2.0 - A Random Dilated Dictionary Transform for Fast, Accurate and Constrained Memory Time Series Classification
https://github.com/ajshajib/dolphin
Automated pipeline for lens modelling based on lenstronomy
https://github.com/desbordante/desbordante-core
Desbordante is a high-performance data profiler that is capable of discovering many different patterns in data using various algorithms. It also allows to run data cleaning scenarios using these algorithms. Desbordante has a console version and an easy-to-use web application.
https://github.com/ibridges-for-irods/ibridges
A wrapper around the python-irodsclient to allow for easy interaction with iRODS servers.
Mosquitto
Mosquitto: server and client implementation of the MQTT protocol - Published in JOSS (2017)
https://github.com/georgedouzas/imbalanced-learn-extra
Implementation of novel oversampling algorithms.
magicbathynet
Quick start guide for benchmarking MagicBathyNet dataset in learning-based bathymetry and pixel-based classification using Remote Sensing imagery.
hddtools
hddtools: Hydrological Data Discovery Tools - Published in JOSS (2017)
IDEAS
Modelica library allowing simultaneous transient simulation of thermal and electrical systems at both building and feeder level.
foundation-model-benchmarking-tool
Foundation model benchmarking tool. Run any model on any AWS platform and benchmark for performance across instance type and serving stack options.
greenlight-gym2
Reinforcement learning environment for controlling greenhouse crop production systems. The greenhouse dynamics are based on GreenLight..
differential-equations
A high-performance library for numerically solving differential equations in Rust
robot_remote_control
A library for framework independent remote control of semi-autonomous robots. The library is in active development and might change a lot.
mini-callcenter-simulator
Mini Callcenter Simulator simulates a call center and takes into account many parameters not covered by the Erlang C formula.
lemons
Generate non-circuLar, anthropometry-based pEdestrian shapes and simulate their Mechanical interactiONS in two dimensions
augmentedgaussianprocesses.jl
Gaussian Process package based on data augmentation, sparsity and natural gradients
TNC: Distributed Tensor Network Contractions in Rust
TNC: Distributed Tensor Network Contractions in Rust - Published in JOSS (2026)
globalid-database
Here you can find the most recent version of the GlobaLID database. Stable versions are regularly published at https://doi.org/10.5880/fidgeo.2023.043
WoodTapper: a Python package for explaining decision tree ensembles
WoodTapper: a Python package for explaining decision tree ensembles - Published in JOSS (2026)