GitHub
BiGGer
BiGGer: A Model Transformation Tool written in Java for Bigraph Rewriting in GrGen.NET - Published in JOSS (2024)
m4.4_sciwin_client
🦀 SciWIn Client: Reproducible computational Workflows made easy!
geoquery
This is a read-only mirror of the git repos at https://bioconductor.org
intro-to-genome-browsers
Melbourne Bioinformatics Introduction to Genome Browsers workshop materials.
MousebreedeR
MousebreedeR: A novel software to assist in the design of breeding schema for complex genotypes of experimental organisms - Published in JOSS (2024)
stats-array-stdevch
Calculate the standard deviation of an array using a one-pass trial mean algorithm.
SpiDy.jl
SpiDy.jl: open-source Julia package for the study of non-Markovian stochastic dynamics - Published in JOSS (2024)
dog-behavior-framework
A trust-based behavioural system for dogs, inspired by emotional logic and communication.
guida-per-tour-audulti-musei-civici
Guida per spiegare le Opere dei Musei Civici agli Adulti
Anime
Anime: Atmospheric and Instrument Models in the Measurement Equation - Published in JOSS (2024)
agweather-qaqc
agweather-qaqc: An Interactive Python Package for Quality Assurance and Quality Control of Daily Agricultural Weather Data and Calculation of Reference Evapotranspiration - Published in JOSS (2024)
hides
Linux Loadable Kernel Module Rootkit for Linux Kernel 5.x and 6.x on x86_64, hides files, hides process, hides bind shell & reverse shell…
stats-strided-dsvariance
Calculate the variance of a single-precision floating-point strided array using extended accumulation and returning an extended precision result.
GIRFReco.jl
GIRFReco.jl: An Open-Source Pipeline for Spiral Magnetic Resonance Image (MRI) Reconstruction in Julia - Published in JOSS (2024)
CloudCovErr
Pipeline for debiasing and improving error bar estimates for photometry on top of structured/filamentary background.
best-practice-documentation
The best-practice documentation of SDSC (mirror from Gitlab)
sparsematrixcolorings.jl
Coloring algorithms for sparse Jacobian and Hessian matrices
wneq
wneq is a Python package for computing nuclear equilibria in nucleosynthesis.
daedalus
[UNDER DEVELOPMENT] R package implementing the DAEDALUS model for projecting and optimising health, social, and economic costs of a pandemic.
stars-reproduce-johnson-2021
Assessing the computational reproducibility of Johnson et al. 2021 as part of STARS.
goFlux
goFlux: A user-friendly way to calculate GHG fluxes yourself, regardless of user experience - Published in JOSS (2024)
ai-attendance-system
An AI-powered attendance system using YOLOv5 for face detection and recognition.
awesome-arm-in-smart-agriculture
A collection of literature on the use of association rule mining methods in smart agriculture
mlflow-cnn
Galaxy Redshift Estimation Using Convolutional Neural Networks with MLflow Tracking
https://github.com/lynn-miller/lfmc_from_modis
Live fuel moisture content estimation from MODIS: a deep learning approach
VSMOD: A Vessel Segmentation and MODelization plugin for 3D Slicer
VSMOD: A Vessel Segmentation and MODelization plugin for 3D Slicer - Published in JOSS (2025)
fair_genome_indexer
Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low TSL, index with multiple tools
macchiato
Macchiato is a Petri Nets implementation for Python 3 with a focus of usability and scriptability.
evexplorer
nf-core/evexplorer is a pipeline for analyzing RNA data from extracellular vesicles, compatible with technologies such as nextflex, comboSeq, and ONT with further support forthcoming. evexplorer handles QC, expressed region detection, library size normalization and Differential RNA Expression (DRE)
mumu
C++ implementation of lulu, a R package for post-clustering curation of metabarcoding data
MicroTracker.jl
MicroTracker.jl: A Julia package for microbot research - Published in JOSS (2024)
stochasticvehiclescheduling.jl
Application of InferOpt.jl to the Stochastic Vehicle Scheduling Problem
intro-tableau
An introductory lesson on data visualization using Tableau Public. Learners create charts, explore datasets, and build dashboards—no prior experience required.
ultralystics-baseline
Based on the official Ultralytics repository, I've added some of my own tricks to serve as a baseline for various comparative experiments in object detection.
lambdanative-and-fdroid
Introduction to building and distributing Android applications
portal-admin
Sistema de gerenciamento de orçamentos, solicitações de serviços, fornecedores e clientes.
spectacoular
Extension module for Acoular for the realization of microphone array GUI applications with minimal programming effort.
pid4cat-model
Handle-based PIDs with a rich LinkML metadata model for resources in catalysis (PID4Cat)
hydropower-fatigue-damage-reduction
Code for EPFL PTMH & SDSC's paired-hydro project
haploidsprucemap
Scripts and data input files for Norway spruce genetic maps from haploid megagametophyte data. Maps and results are presented in Bernhardsson et al. (2018). "An ultra-dense haploid genetic map for evaluating the highly fragmented genome assembly of Norway spruce (Picea abies) "
diffilqrax
Diffilqrax is an open-source Python library for differentiable iLQR and LQR in JAX