GitHub
sat-ds
The official repository to build SAT-DS, a medical data collection of over 72 public segmentation datasets, contains over 22K 3D images, 302K segmentation masks and 497 classes from 3 different modalities (MRI, CT, PET) and 8 human body regions.
appeears-data-resources
This repository provides resources and tutorials to help users work with AppEEARS programmatically.
demgen
This code aims to achieve a standardized particle packing generation framework for granular materials.
pyeugene
Simple python version of EUGEN program, as described by Izgorodina et al (DOI: 10.1021/cg900656z)
happypose
Toolbox and trackers for object pose-estimation. Based on the work CosyPose and MegaPose
https://github.com/biomeds/python_course_ws24
Programming with Python course for master biosciences at the University of Würzburg (winter semester 24/25)
pyleco
Python implementation of the Laboratory Experiment COntrol (LECO) protocol
pace_oci_l2_to_l3
Tutorial for using NASA's SeaDAS to convert PACE OCI L2 surface reflectance to L3 data
https://github.com/huggingface/xlnet
XLNet: Generalized Autoregressive Pretraining for Language Understanding
traitblender
Blender addon for simulating raw datasets under known evolutionary models
java-vulnerability-patch-retriever
Sistema de recuperación semántica para sugerir commits de parche de vulnerabilidades en Java. Combina BM25 y Sentence Transformers para encontrar soluciones relevantes, evaluadas con métricas estándar. Basado en el dataset curado de TUHH-SoftSec.
@stdlib/blas-base-zcopy
Copy values from one complex double-precision floating-point vector to another complex double-precision floating-point vector.
quantum-lab
Boilerplate for TorchQuantum Driven Deep Learning Research with PyTorch Lightning and Lightning Fabric
analysis-gradient-descent-circuits
Code & Simulink models for “Analysis of gradient descent algorithms: Discrete to continuous domains and circuit equivalents” (SCL, 2025)
sir-model
Code & Simulink/linear-systems models for “A microscopic-view Infection model based on linear systems” (Information Sciences, 2020)
kraken-infinity-grid
Infinity Grid Trading Algorithm for the Kraken Cryptocurrency Exchange.
taxotagger
DNA taxonomy identification, powered by deep learning and semantic search
2024-11-27-hpcc-online
Workshop website for HPC Carpentry, Term ,1 acc year 2024/25
bioinformatics-templates
Reusable R/Bash scripts for RNA-Seq (DESeq2), VCF filtering, and multi-omics visualization (heatmaps, volcano plots)
pipelines
Custom JWST reduction pipelines for NIRSpec and MIRI Solar System observations
collectress
Collectress (/kəˈlɛktɹɪs/) is a Python tool designed for downloading web data feeds periodically and consistently.
zensvi
This package is a one-stop solution for downloading, cleaning, analyzing street view imagery
quarto-modal
A Quarto extension providing a simple way to create Bootstrap modals in your HTML documents.
physicell
PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!
fastapi-postgres
Template for building FastAPI Asynchronous applications with PostgreSQL(SQLModel)
fasta-rbca-resolver
Fasta Automated Rule-Based Country Assignment (RBCA) for influenza
math-base-special-minabsf
Return the minimum absolute single-precision floating-point number.
r-lib-actions
GitHub Actions for the R community. Secure drop-in replacement for r-lib/actions.
stats-strided-snanrange
Calculate the range of a single-precision floating-point strided array, ignoring NaN values.
number-uint32-base-muldw
Compute the double word product of two unsigned 32-bit integers.
9
Compare the results from eQuilibrator (component contribution) or group contribution methods with experimental results from nucleoside phosphorolysis
stats-array-meanpw
Calculate the arithmetic mean of an array using pairwise summation.
bhme_streamflow
The code and data necessary to reproduce results in the paper 'Where the creeks run dry or ten feet high’: A probabilistic approach to streamflow forecasting in Australia.
assert-is-almost-equal-complex128array
Test if two arguments are both Complex128Arrays and contain respective elements which are approximately equal within a specified number of ULPs (units in the last place).
sluarch
SlµArch (Sleep MicroArchitecture): a Python package to analyse sleep microarchitecture.
constants-float32-min-base10-exponent-subnormal
The minimum base 10 exponent for a subnormal single-precision floating-point number.
