webarena-autogpt • Science 54%

fork of webarena with autogpt implementation

basketball_detector • Science 44%

:basketball: BasketballDetector implementation using a segmentation approach

openmpp — Peer-reviewed • Science 93%

openmpp: An R package for dynamic microsimulation modeling using OpenM++ - Published in JOSS (2025)

GraphBin-Tk — Peer-reviewed • Science 93%

GraphBin-Tk: assembly graph-based metagenomic binning toolkit - Published in JOSS (2025)

edc-0-6-4 • Science 44%

scproximite • Science 67%

sc Proximity Evaluation (scProximitE) is a framework for evaluating proximity metric performance on scRNA-seq data properties.

NMRInversions.jl, a Julia package for time-domain Nuclear Magnetic Resonance — Peer-reviewed • Science 98%

NMRInversions.jl, a Julia package for time-domain Nuclear Magnetic Resonance - Published in JOSS (2025)

video_conversion • Science 44%

cruzeiro-do-sul-database • Science 57%

Quati Beamline (Sirius-CNPEM) XAS database

PyRASA - Spectral parametrization in python based on IRASA — Peer-reviewed • Science 93%

PyRASA - Spectral parametrization in python based on IRASA - Published in JOSS (2025)

webarena-chat-react • Science 54%

fork of webarena, modified with ReAct + chat functionality

cb2 • Science 44%

test site

etnobotanica-bororo • Science 67%

vhdlmachines • Science 44%

The LLFSM Format for VHDL Machines.

fastfrechet — Peer-reviewed • Science 93%

fastfrechet: An R package for fast implementation of Fréchet regression with distributional responses - Published in JOSS (2025)

elasticity-controller-docker • Science 44%

Controlador de elasticidade para o TCC do 4 ano de Ciência da Computação na Unioeste

rkhsregularization.jl • Science 44%

Light weight RKHS regularization (e.g. Gaussian process regression without statistical-considerations) tools with dimensional expansion kernels.

BREADR — Peer-reviewed • Science 93%

BREADR: An R Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data - Published in JOSS (2025)

Slicer-Liver — Peer-reviewed • Science 93%

Slicer-Liver: A 3D Slicer Extension for Liver Surgery Planning - Published in JOSS (2025)

neon-efi-challenge • Science 57%

constrained_manipulability — Peer-reviewed • Science 93%

constrained_manipulability: A ROS 2 library to Compute and Visualize Constrained Capacities for Robotic Manipulators - Published in JOSS (2025)

sdf-xarray • Science 67%

An xarray backend for reading SDF files from EPOCH

bffs • Science 44%

mallm • Science 44%

Framework: Multi-Agent LLMs For Conversational Task-Solving (MALLM)

MRI-NUFFT — Peer-reviewed • Science 93%

MRI-NUFFT: Doing non-Cartesian MRI has never been easier - Published in JOSS (2025)

lazyscholar • Science 54%

catena • Science 54%

Comprehensive platform for automated large-scale connectomics. Segmentation and Detection models built upon Funke lab's algorithms.

An Introduction to prismAId — Peer-reviewed • Science 93%

An Introduction to prismAId: Open-Source and Open Science AI for Advancing Information Extraction in Systematic Reviews - Published in JOSS (2025)

matsim-kelheim-emission • Science 67%

text-normalizer • Science 44%

Text normalizer for obtaining a Unicode Normalization Form for URL creation

constants-float32-sqrt-two-pi • Science 44%

Square root of 2π as a single-precision floating-point number

testing3 • Science 44%

Dummy description.

blas-ext-base-ndarray-dcusum • Science 44%

Compute the cumulative sum of a one-dimensional double-precision floating-point ndarray.

dataanalysis • Science 44%

CAM-App written in Shiny (R) and Python to analyze CAM data

nlp-processing • Science 44%

gnark-playground • Science 54%

cmextremes-xb2xbg • Science 44%

Python script to convert XBeach parameter files for use with XBeach-GPU. It can also be used to generate default XBeach-GPU parameters.

indexer-rollup • Science 44%

A rollup-indexing rollup built on the OP Stack

pmv-ads-2024-1-e2-proj-int-t6-repoinsight • Science 44%

pmv-ads-2024-1-e2-proj-int-t6-repoinsight created by GitHub Classroom

cotton_yield_estimation • Science 57%

detection-limit-fitting • Science 67%

Software for fitting robust detection limits to serial dilution data

bagel-cli • Science 44%

Command line tool for Neurobagel data parsing and annotation

mise • Science 67%

iso-19139-to-dcat-ap • Science 44%

Reference XSLT-based implementation of GeoDCAT-AP

rpms • Science 44%

scrnaseq_howto_ga_workflows • Science 57%

Howto guide for scrnaseq workflows in scrnaseq_ga_workflows

darpanx • Science 67%

DarpanX is a Python 3 package that provides functionality to compute reflectivity and other specular optical functions of a multilayer or single layer mirror for different energy and angles as well as to fit the XRR measurements of the mirrors.

peaky-echos • Science 44%

Workflow for the detection and categorization of dolphin echolocation with peaks and notches present in their spectrum.

fire-g • Science 67%

A four-dimensional thermodynamic theory of gravity replacing dark matter and dark energy.

cessda.cdc.fuji.runner • Science 54%

Used to evaluate the contents of CDC - calls cessda.cdc.fuji.api

tongji-undergrad-thesis-template • Science 44%

read5_ont • Science 54%

Wrapper to read fast5 and pod5 files.

bitmarkerlove • Science 44%

dreamlab2024 • Science 52%

class demo repository for advocating for community, dreamlab 2024

yolov8_prune • Science 44%

This project demonstrates a systematic approach to model optimization, showcasing the importance of fine-tuning in the context of model pruning. It provides a foundation for further research and development in the field of efficient deep learning model deployment.

detection-of-real-and-simulated-ecgs • Science 44%

battmo • Science 64%

Continuum modelling for electrochemical devices.

datamanagement • Science 44%

douconca • Science 49%

Analysis of multi-trait multi-environment ecological data using double constrained correspondence analysis

Liblsl.dart: A Dart native API for Lab Streaming Layer (LSL) • Science 98%

Liblsl.dart: A Dart native API for Lab Streaming Layer (LSL) - Published in JOSS (2026)

insightstack • Science 49%

Real documentation, MEL tools, and calculators for public knowledge work

osptrack • Science 67%

labelled dataset for simulated package execution with package-analysis

hendi-webapp • Science 54%

Adaption of WeGA-WebApp

hendi-odd • Science 44%

The ODD specs of Henze-Digital

assert-is-struct-constructor-like • Science 44%

Test if a value is struct constructor-like.

array-base-fancy-slice • Science 44%

Return a shallow copy of a portion of an array.

building-a-community • Science 44%

ensembles.jl • Science 44%

Ensembles

2hdm • Science 67%

fitmydata • Science 44%

Efficient and versatile software to study single-photon sources.

skltest • Science 44%

Python library to compare the performance obtained by models available in Scikit-learn to solve regression and classification problems. It is possible to evaluate the influence of successive resampling and optimize the hyperparameters through a K-fold cross-validation holdout.

carpentry-lesson-test • Science 44%

image-processing-based-motion-sensing-with-telegram • Science 67%

Final Project

workshopqcd-2024-lesson-git • Science 44%

coki-oa-web • Science 54%

COKI Open Access Dashboard Web Application

rqi-proto • Science 67%

Replication package for the prototype study empirically investigating requirements quality impact

pypss-proliferating-nematic • Science 44%

two-bladed-wind-turbines • Science 67%

This repository is supposed to share wind turbine models to use in Bladed, together with the controller files and respective turbine data from the German government-funded project "X-Rotor -- two-bladed wind turbines" with the research community.

open-research-practice-guide • Science 52%

mfod_master • Science 44%

thresholdqst • Science 67%

A Python library to implement threshold quantum state tomography for qubits.

lc-open-science-community-of-practice • Science 44%

A lesson on building Open Science Communities of Practice to support inclusive, team-based research. Includes templates, facilitation guides, and outreach strategies for librarians and research staff.

kmer-counter • Science 44%

Count kmers with a more efficient (faster) hash table

sixarm_javascript_age_gate • Science 44%

SixArm » JavaScript » Age Gate demo web form

reusable-workflows • Science 44%

♻️ Reusable GitHub Actions & Workflows

logisticchain • Science 44%

The logistics platform model based on hyperledger fabric blockchain, complete simulation of the entire international shipping process.

atomictools • Science 44%

Python package to create and visualize atomic orbitals and more

rnmp_hotspots • Science 67%

Finding common and highly incorporated rNMP locations using rNMP Enrichment Factor

metascc • Science 54%

Kernel density estimates of the social cost of carbon

teachbook1 • Science 44%

https://sivuyisomvani28.github.io/teachbook1

2025-06-26-cdu-online • Science 44%

xai_cost • Science 67%

lab-website • Science 44%

PhenoFeatureFinder — Peer-reviewed • Science 95%

PhenoFeatureFinder: a python package for linking developmental phenotypes to omics features - Published in JOSS (2024)

st4sd-olm • Science 44%

An Operator Lifecycle Manager (OLM) operator to automate installing and upgrading ST4SD deployments on OpenShift clusters

nmsk • Science 44%

lab website template

covid-campus-phylodynamics • Science 67%

Git Repo for the paper: On-Campus Dormitories as Viral Transmission Sinks: Phylodynamic Insights into Student Housing Networks During the COVID-19 Pandemic

mdal • Science 44%

Mesh Data Abstraction Library

epicsculptor • Science 44%

Config files for my GitHub profile.

array-base-flatten • Science 44%

Flatten an n-dimensional nested array.