GitHub
covid-campus-phylodynamics
Git Repo for the paper: On-Campus Dormitories as Viral Transmission Sinks: Phylodynamic Insights into Student Housing Networks During the COVID-19 Pandemic
ontology-overview-of-nfdi4cat
Repository which lists several ontologies relevant for catalysis research.
microbial-richness-troposphere
Accompanying code for the manuscript "Microbial species richness in tropospheric samples above the planetary boundary layer confirms hundreds of Km long-distance transport of potential human pathogens"
rfkindianacamp
Final project documenting RFK's 1968 presidential campaign in Indiana
pco-si-2024-1-tiaw-blood-on
pco-si-2024-1-tiaw-blood-on created by GitHub Classroom
broadway-edft
Broadway code for implementing ensemble DFT and mathematically similar theories
trycycler
A tool for generating consensus long-read assemblies for bacterial genomes
GOBLIN Lite
GOBLIN Lite: A National Land Balance Model for Assessment of Climate Mitigation Pathways for Ireland. - Published in JOSS (2024)
stats-strided-drange
Calculate the range of a double-precision floating-point strided array.
markdownreports
Type Less, Plot More. Create and auto-annotated and -saved (base) plots with very little code, and write (markdown) reports easily from your R scripts.
descriptron
A python GUI for custom training and prediction of AI models for automated taxonomic species descriptions
datafold
Extended Dynamic Mode Decomposition for system identification from time series data (with dictionary learning, control and streaming options). Diffusion Maps to extract geometric description from data.
https://github.com/llrs/histime
Provides an extension to ggplot2 for histogram of ranges of dates.
cnn-soiltextureclassification
1-dimensional convolutional neural networks (CNN) for the classification of soil texture based on hyperspectral data
declare-repo
Social Repository for Storing and Sharing Declare Process Models for Primarily Model Reuse and Benchmarking Purposes
knnpe
knnpe: A Python package implementing the k-nearest neighbor permutation entropy
stac-model
STAC Machine Learning Model (MLM) Extension to describe ML models, their training details, and inference runtime requirements.
research-team-co-authorship
Searches in PubMed and retrieves co-authored articles via the Entrez Programming Utilities
reproresearch
ReproResearch: A ready-to-use repository for FAIR reproducible research (data) projects
predicting_alarm_audibility
This Python code is derived from the research article "Evaluating and Predicting the Audibility of Acoustic Alarms in the Workplace Using Experimental Methods and Deep Learning" published in the journal Applied Acoustics. It provides a framework for predicting the audibility of acoustic alarms in noise, and includes scripts to reproduce the results
in-context-asr
a tiny evaluation dataset for ASR models measuring their ability to adapt based on context
sofaviscoelastic
A Plugin for the SOFA framework to describe linear viscoelastic and visco-hyperelastic materials
llm-change-agent
LLM Change Agent is a command-line interface (CLI) tool designed to interact with various language models for generating and modifying ontology definitions. It offers a range of functionalities to streamline KGCL command generation tasks.
kan_voice_pathology_detection
This repository contains the code for the paper "Kolmogorov Arnold Network-Based Voice Pathology Detection" by Jan Vrba, Jakub Steinbach, Tomáš Jirsa, Jakub Seiner, Yuwen Zeng, Kei Ichiji, Noriyasu Homma
spark_bts_kifaru
MICCA_BRATS_Africa_2023 Kifaru Team: Generative Style Transfer for MR Image Segmentation: A Case of Glioma Segmentation in Sub-Saharan Africa
promise
An application development framework that supports the development of complex language-based interactions using state machine modeling concepts
jordan22_dataset
Jordan22 Dataset that used in Identification of Plant Diseases in Jordan Using Convolutional Neural Networks
marine-detect
Object detection models for identifying species in marine environments.
coq-multivariate-rde-solver
A Coq formalization and solver for general multivariate recursive domain equations, enabling the construction and verification of solutions for recursive structures in programming language semantics and formal methods.
clinicaltemplatereader
A public API to interpret Eclipse plan templates, objective templates, and clinical protocols and utilize the interpretation in the generation of automated plans.
lc-authoring-open-science
Introduces open science practices in writing, publishing, and peer review. Covers open tools, contributor roles, and how transparency supports reproducibility and equity.
https://github.com/llrs/ghana_packages
Workshop about how to build R packages for the Ghana R user group
jlhfw
Custom FireWorks extensions used by IMTEK Simulation, University of Freiburg
stickydesign
A package for designing short orthogonal and isoenergetic DNA sequences, intended for DNA tile sticky ends and often used for toeholds.
simultaneous-fmri-and-eyetracking
Project repository for our first study on observing program comprehension with simultaneous fMRI and eye tracking
