GitHub
https://github.com/bmaitner/community_ecology_course
Content for a Community Ecology course
constanttermsequences
A Sage library implementing functions manipulating and computing with Constant Term Sequences
explainai
Open-source framework for visual explanation of transformer-based neural networks
@hugoalh/sort
An ECMAScript (JavaScript & TypeScript) module for enhanced sort operation.
ias
Interferometry Analysis Software (IAS) is a dedicated tool for studying gas, vapor, and plasma jets. IAS uses a new algorithm and GUI to analyze interferograms. It can retrieve the accumulated phase shift and apply Abel inversion to estimate the density profile of targets (gas, vapor, or plasma).
methylarray
Process methylation data from Illumina arrays. Pre-processing, quality checks, confounder check and DMPs (differentially methylated positions) and DMRs (differentially methylated regions). Optionally estimates cell type composition and adjusts data for it.
ada-track
Offical implementation of CVPR2024 paper ADA-Track: End-to-End Multi-Camera 3D Multi-Object Tracking with Alternating Detection and Association.
lim3d
🔥(CVPR 2023) Less is More: Reducing Task and Model Complexity for 3D Point Cloud Semantic Segmentation
islandevolution.github.io
Source code for the Island biology, diversification, genome evolution lab
arch2022_ainncs_re
Repeatability evaluation package for the ARCH2022 AINNCS competition
arch2021_ainncs_re
Repeatability evaluation package for the ARCH2021 AI/NNCS competition
arch2021_nln_re
Repeatability evaluation package for the ARCH2021 NLN competition
nf-gwas
A nextflow pipeline to perform state-of-the-art genome-wide association studies.
@stdlib/math-strided-special-asinh-by
Compute the hyperbolic arcsine of each element retrieved from an input strided array via a callback function.
diffbev
Official PyTorch implementation for a conditional diffusion probability model in BEV perception
seaiceconcentration_atbd
Jupyterbook for the CIMR Level-2 Sea Ice Concentration ATBD developed in the DEVALGO study
chooseadb.github.io
A game to provide guidance on choosing a database for your project
smartx_ch4cast
Forecasts of methane (CH4) fluxes from the Salt Marsh Accretion Response to Temperature eXperiment (SMARTX)
assemblebac-ont
avantonder/assembleBAC-ONT is a bioinformatics pipeline that de novo assembles and annotates Oxford Nanopore (ONT) long-read sequence data.
lo2s
Linux OTF2 Sampling - A Lightweight Node-Level Performance Monitoring Tool
charmmguiauto
CharmmGuiAuto is a tool designed to streamline and automate interactions with CHARMM-GUI, the web-based graphical user interface for CHARMM (Chemistry at HARvard Macromolecular Mechanics). This tool simplifies the process of preparing input files for molecular dynamics simulations.
8
Create an open database for the thermodynamics of enzyme-catalyzed reactions (and other metabolism relevant thermodynamic data)
strip-r-cnn
Offical implementation of "Strip R-CNN: Large Strip Convolution for Remote Sensing Object Detection"
stats-strided-dnanmskrange
Calculate the range of a double-precision floating-point strided array according to a mask, ignoring NaN values.
privacy_collaborative_research_cycle
This repository houses the NIST, submissions and evaluation data related to the Collaborative Research Cycle
ndarray-vector-int16
Create a signed 16-bit integer vector (i.e., a one-dimensional ndarray).
lasermix
[CVPR 2023 Highlight] LaserMix for Semi-Supervised LiDAR Semantic Segmentation
stats-strided-dmeanpn
Calculate the arithmetic mean of a double-precision floating-point strided array using a two-pass error correction algorithm.
kinetics-optimization
Jupyter Hub Code for the multi strategy optimization of Reaction Kinetics for Methanol Synthesis
stats-strided-dstdevch
Calculate the standard deviation of a double-precision floating-point strided array using a one-pass trial mean algorithm.
khan_fbg-cgm-measues-agreement
Khan et al-Agreement Between Fingerstick Blood Glucose and Continuous Glucose Monitor Measures Among Long-Term Care Facility Residents.
random-tools-unary-factory
Create a function for generating pseudorandom numbers drawn from a single-parameter probability distribution.
instance-segmenation-with-maskrcnn
Use MaskRCNN to do the Instance segmentation
mukh
A comprehensive face analysis library that provides unified APIs for various face-related tasks
constants-float32-max-safe-nth-tribonacci
Maximum safe nth Tribonacci number when stored in single-precision floating-point format.
dabnet
[TNNLS] Official implementation of 'Real-time Semantic Segmentation via Densely Aggregated Bilateral Network', in Pytorch.
https://github.com/dcan-labs/abcd-surf
A citizen science game for ABCD Study Quality Control of surface delineations.
stats-base-ztest-alternative-str2enum
Return the enumeration constant associated with a Z-test alternative hypothesis string.
stats-strided-mediansorted
Calculate the median value of a sorted strided array.
stats-strided-dmaxabs
Calculate the maximum absolute value of a double-precision floating-point strided array.
stats-base-ndarray-min
Compute the minimum value of a one-dimensional ndarray.
blas-base-dtrmv
Perform one of the matrix-vector operations `x = A*x` or `x = A^T*x`.
stats-array-mskmax
Calculate the maximum value of an array according to a mask.
https://github.com/dcelisgarza/wenoof
WENO interpolation Object Oriented Fortran library
seaicedrift_atbd_v2
Jupyterbook for the CIMR Level-2 Sea Ice Drift ATBD developed in the DEVALGO study
math-base-special-ahavercosf
Compute the inverse half-value versed cosine for a single-precision floating point number.
stats-array-meanwd
Calculate the arithmetic mean of an array using Welford's algorithm.
genjax
Probabilistic programming with programmable inference for parallel accelerators.
lang-chr
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Cherokee language
pyswipe
Python implementation of the Swarm Ionospheric Polar Electrodynamics (SWIPE) model
fridgie_paper
This is a paper and its supplementary material, bundled together.
https://github.com/dcan-labs/abcd_task_prep
repository which reads in eprime task files from SST, MID, and nBack tasks.
vlslice
Code for the 2023 ICCV paper "VLSlice: Interactive Vision-and-Language Slice Discovery."