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getDEE2

Programmatic access to the DEE2 RNA expression dataset.

https://github.com/markziemann/getdee2

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic links in README
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (0.6%) to scientific vocabulary

Keywords

bioinformatics data-mining genomics rna-expression rna-seq transcriptomics
Last synced: 6 months ago · JSON representation

Repository

Programmatic access to the DEE2 RNA expression dataset.

Basic Info
Statistics
  • Stars: 4
  • Watchers: 2
  • Forks: 0
  • Open Issues: 2
  • Releases: 0
Topics
bioinformatics data-mining genomics rna-expression rna-seq transcriptomics
Created almost 6 years ago · Last pushed 8 months ago
Metadata Files
Changelog

Owner

  • Name: Mark Ziemann
  • Login: markziemann
  • Kind: user
  • Location: Melbourne & Geelong, Australia
  • Company: Deakin University

GitHub Events

Total
  • Issues event: 2
  • Delete event: 2
  • Push event: 8
  • Pull request event: 2
  • Create event: 2
Last Year
  • Issues event: 2
  • Delete event: 2
  • Push event: 8
  • Pull request event: 2
  • Create event: 2

Committers

Last synced: about 2 years ago

All Time
  • Total Commits: 40
  • Total Committers: 2
  • Avg Commits per committer: 20.0
  • Development Distribution Score (DDS): 0.1
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
markziemann m****n@g****m 36
Nitesh Turaga n****a@g****m 4

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 11
  • Total pull requests: 1
  • Average time to close issues: 8 days
  • Average time to close pull requests: less than a minute
  • Total issue authors: 2
  • Total pull request authors: 1
  • Average comments per issue: 1.82
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 1
  • Average time to close issues: 1 day
  • Average time to close pull requests: less than a minute
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • markziemann (10)
  • kMutagene (1)
Pull Request Authors
  • markziemann (1)
Top Labels
Issue Labels
enhancement (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 8,216 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 6
  • Total maintainers: 1
bioconductor.org: getDEE2

Programmatic access to the DEE2 RNA expression dataset

  • Versions: 6
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 8,216 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 26.9%
Downloads: 80.6%
Maintainers (1)
mark.ziemann@gmail.com
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.0 depends
  • SummarizedExperiment * imports
  • htm2txt * imports
  • stats * imports
  • utils * imports
  • knitr * suggests
  • rmarkdown * suggests
  • testthat * suggests