sights
SIGHTS is an R-package for analysing High-Throughput Screening data. It is available through Bioconductor. Please see the README below for further links and information.
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
1 of 5 committers (20.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (12.1%) to scientific vocabulary
Keywords from Contributors
Repository
SIGHTS is an R-package for analysing High-Throughput Screening data. It is available through Bioconductor. Please see the README below for further links and information.
Basic Info
- Host: GitHub
- Owner: eg-r
- License: gpl-3.0
- Language: R
- Default Branch: master
- Homepage: http://bioconductor.org/packages/sights/
- Size: 3.21 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 1
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
SIGHTS R-package
SIGHTS is a suite of normalization methods, statistical tests, and diagnostic graphical tools for high throughput screening (HTS) assays. HTS assays use microtitre plates to screen large libraries of compounds for their biological, chemical, or biochemical activity.
Abstract
Identifying rare biological events in high-throughput screens requires using the best available normalization and statistical inference procedures. It is not always clear, however, which algorithms are best suited for a particular screen. The Statistics and dIagnostics Graphs for High Throughput Screening (SIGHTS) R package is designed for statistical analysis and visualization of HTS assays. It provides graphical diagnostic tools to guide researchers in choosing the most appropriate normalization algorithm and statistical test for identifying active constructs.
Links
Installation
Run in R :
Bioconductor (try http:// if https:// URLs are not supported)
source("https://bioconductor.org/biocLite.R") biocLite("sights") library(sights)GitHub
install.packages("devtools") library(devtools) install_github("eg-r/sights") library(sights)
Citation
Run in R: citation("sights")
License
Owner
- Name: Elika Garg
- Login: eg-r
- Kind: user
- Repositories: 2
- Profile: https://github.com/eg-r
GitHub Events
Total
Last Year
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Elika Garg | e****g@m****a | 6 |
| Elika Garg | e****r | 4 |
| Herve Pages | h****s@f****g | 4 |
| Hervé Pagès | h****s@f****g | 2 |
| Martin Morgan | m****n@f****g | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: over 1 year ago
All Time
- Total issues: 1
- Total pull requests: 1
- Average time to close issues: about 1 year
- Average time to close pull requests: less than a minute
- Total issue authors: 1
- Total pull request authors: 1
- Average comments per issue: 2.0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- erinshellman (1)
Pull Request Authors
- eg-r (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- bioconductor 14,414 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: sights
Statistics and dIagnostic Graphs for HTS
- Homepage: https://eg-r.github.io/sights/
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/sights/inst/doc/sights.pdf
- License: GPL-3 | file LICENSE
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Latest release: 1.34.0
published about 1 year ago
Rankings
Maintainers (1)
Dependencies
- R >= 3.3 depends
- MASS >= 7.3 imports
- ggplot2 >= 2.0 imports
- lattice >= 0.2 imports
- qvalue >= 2.2 imports
- reshape2 >=1.4 imports
- stats >= 3.3 imports
- ggthemes * suggests
- gridExtra * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests
- xlsx * suggests