Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
2 of 4 committers (50.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.2%) to scientific vocabulary
Keywords from Contributors
Repository
Repository for the gg4way Bioconductor package
Basic Info
- Host: GitHub
- Owner: ben-laufer
- License: other
- Language: R
- Default Branch: devel
- Homepage: https://bioconductor.org/packages/gg4way
- Size: 3.88 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
gg4way
4way plots enable a comparison of two contrasts of differential gene expression. The gg4way package creates 4way plots using the ggplot2 framework and supports popular Bioconductor objects. The package also provides information about the correlation and genes of interest.
Installation
gg4way can be installed from Bioconductor:
``` r if (!requireNamespace("BiocManager", quietly = TRUE)){ install.packages("BiocManager") }
BiocManager::install("gg4way") ```
To install the development version directly from GitHub:
```r if(!requireNamespace("remotes", quietly = TRUE)){ install.packages("remotes") }
remotes::install_github("ben-laufer/gg4way") ```
Examples
See the package vignette.
Owner
- Name: Ben Laufer
- Login: ben-laufer
- Kind: user
- Location: San Francisco, CA
- Company: Genentech
- Website: https://benlaufer.com
- Twitter: laufer_ben
- Repositories: 2
- Profile: https://github.com/ben-laufer
Principal Scientist in the Department of OMNI Bioinformatics at Genentech.
GitHub Events
Total
- Push event: 3
- Create event: 2
Last Year
- Push event: 3
- Create event: 2
Committers
Last synced: 10 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Ben Laufer | l****n@g****m | 9 |
| J Wokaty | j****y@s****u | 4 |
| A Wokaty | a****y@s****u | 2 |
| J Wokaty | j****y@u****m | 2 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- bioconductor 4,464 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 7
- Total maintainers: 1
bioconductor.org: gg4way
4way Plots of Differential Expression
- Homepage: https://github.com/ben-laufer/gg4way
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/gg4way/inst/doc/gg4way.pdf
- License: MIT + file LICENSE
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Latest release: 1.6.1
published 10 months ago
Rankings
Maintainers (1)
Dependencies
- R >= 4.3.0 depends
- ggplot2 * depends
- DESeq2 * imports
- dplyr * imports
- edgeR * imports
- ggrepel * imports
- glue * imports
- janitor * imports
- limma * imports
- magrittr * imports
- methods * imports
- purrr * imports
- rlang * imports
- scales * imports
- stats * imports
- stringr * imports
- tibble * imports
- tidyr * imports
- BiocStyle * suggests
- airway * suggests
- knitr * suggests
- org.Hs.eg.db * suggests
- rmarkdown * suggests
- testthat * suggests