Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 3 DOI reference(s) in README -
○Academic publication links
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✓Committers with academic emails
1 of 13 committers (7.7%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (4.4%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Basic Info
- Host: GitHub
- Owner: TojalLab
- Language: R
- Default Branch: devel
- Homepage: https://bioconductor.org/packages/signeR
- Size: 7.86 MB
Statistics
- Stars: 14
- Watchers: 2
- Forks: 3
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
signeR
The signeR package provides an empirical Bayesian approach to mutational signature discovery. It is designed to analyze single nucleotide variation (SNV) counts in cancer genomes, but can also be applied to other features as well. Functionalities to characterize signatures or genome samples according to exposure patterns are also provided.
Docs & Help
See the Documentation section on the Bioconductor page.
Authors
Rafael Rosales, Rodrigo Drummond, Renan Valieris, Israel Tojal da Silva
Citation
Rosales RA, Drummond RD, Valieris R, Dias-Neto E and Silva ITd (2016). “signeR: An empirical Bayesian approach to mutational signature discovery.” Bioinformatics. doi: 10.1093/bioinformatics/btw572.
License
GPL v3
Owner
- Name: TojalLab
- Login: TojalLab
- Kind: organization
- Repositories: 1
- Profile: https://github.com/TojalLab
GitHub Events
Total
Last Year
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Alexandre Defelicibus | a****s@g****m | 40 |
| Renan Valieris | r****s@a****r | 24 |
| Nitesh Turaga | n****a@g****m | 14 |
| Renan Valieris | r****s@c****r | 14 |
| rodrigo | r****d@g****m | 6 |
| Herve Pages | h****s@f****g | 4 |
| rvalieris | r****s | 3 |
| vobencha | v****n@r****g | 2 |
| J Wokaty | j****y@s****u | 2 |
| Hervé Pagès | h****s@f****g | 2 |
| vobencha | v****a@g****m | 2 |
| J Wokaty | j****y | 2 |
| Martin Morgan | m****n@f****g | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 23
- Total pull requests: 11
- Average time to close issues: 8 months
- Average time to close pull requests: 4 days
- Total issue authors: 16
- Total pull request authors: 3
- Average comments per issue: 3.61
- Average comments per pull request: 0.09
- Merged pull requests: 11
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- tobsecret (5)
- craigdj91 (2)
- xiw588 (2)
- Rashesh7 (2)
- TMante (1)
- tamaraprieto (1)
- hermidalc (1)
- ulah (1)
- wir963 (1)
- khuhu (1)
- xizhihui (1)
- lbeltrame (1)
- itsvenu (1)
- blsfoxfox (1)
- NikdAK (1)
Pull Request Authors
- adefelicibus (6)
- rdrummond (3)
- rvalieris (2)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- bioconductor 19,165 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: signeR
Empirical Bayesian approach to mutational signature discovery
- Homepage: https://github.com/TojalLab/signeR
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/signeR/inst/doc/signeR.pdf
- License: GPL-3
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Latest release: 2.10.0
published 10 months ago
Rankings
Maintainers (1)
Dependencies
- NMF * depends
- VariantAnnotation * depends
- BiocGenerics * imports
- Biostrings * imports
- GenomeInfoDb * imports
- GenomicRanges * imports
- IRanges * imports
- PMCMRplus * imports
- class * imports
- grDevices * imports
- graphics * imports
- methods * imports
- nloptr * imports
- stats * imports
- utils * imports
- BSgenome.Hsapiens.UCSC.hg19 * suggests
- knitr * suggests
- rtracklayer * suggests