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vegan3d

Dynamic and static 3D plotting for vegan

https://github.com/vegandevs/vegan3d

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (10.1%) to scientific vocabulary

Keywords from Contributors

ecological-modelling ecology ordination rmarkdown book
Last synced: 11 months ago · JSON representation

Repository

Dynamic and static 3D plotting for vegan

Basic Info
  • Host: GitHub
  • Owner: vegandevs
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 216 KB
Statistics
  • Stars: 19
  • Watchers: 6
  • Forks: 4
  • Open Issues: 1
  • Releases: 8
Created almost 12 years ago · Last pushed over 1 year ago
Metadata Files
Readme

README.md

What is vegan3d?

vegan3d is an R package of 3D plotting routines split apart from vegan. It can be used for dynamic plots based on rgl package, and for static 3D plots based on scatterplot3d package.

The package contains the following functions: * orditkplot: a Tcl/Tk-based 2D editable plot. Function opens a graphic window where labels can be moved with mouse, but points are fixed. It is also possible to edit labels and zoom into graph, and the final plot can be saved in various graphic formats or saved as an R object that can be further manipulated or plotted with standard R graphics commands.

  • ordirgl with its support functions orglpoints, orgltext, orglsegments, orglellipse, orglspider, orglcluster and orglspantree. These require rgl package and provide dynamic ordination graphics. In general, the orglXXXX functions are similar as 2D ordiXXXX functions in vegan.

  • rgl based support functions rgl.isomap to display isomap results, and rgl.renyiaccum to display renyiaccum results.

  • ordiplot3d for static 3D ordination diagrams. This requires scatterplot3d package.

  • ordilattice3d for static 3D ordination diagrams. This requires lattice package.

  • orditree3d and ordirgltree functions to display a coloured dendrogram tree over a 2D plane. The first is a static function based on scatterplot3d and the latter a dynamic spinnable plot based on rgl. The method was initially designed for showing dendrograms over ordination plane.

Special plotting functions based on lattice and tcltk packages are still in vegan. ggplot2-based functions are in ggvegan and ggvegan2 packages.

Released version

CRAN version status

Build status

R build status

Install Current github Version from R-Universe

```

Install 'vegan3d' in R:

install.packages('vegan3d', repos = c('https://vegandevs.r-universe.dev', 'https://cloud.r-project.org')) ```

Owner

  • Name: vegandevs
  • Login: vegandevs
  • Kind: organization

GitHub Events

Total
  • Create event: 1
  • Release event: 1
  • Issues event: 2
  • Issue comment event: 3
  • Push event: 18
Last Year
  • Create event: 1
  • Release event: 1
  • Issues event: 2
  • Issue comment event: 3
  • Push event: 18

Committers

Last synced: almost 3 years ago

All Time
  • Total Commits: 217
  • Total Committers: 7
  • Avg Commits per committer: 31.0
  • Development Distribution Score (DDS): 0.166
Past Year
  • Commits: 40
  • Committers: 5
  • Avg Commits per committer: 8.0
  • Development Distribution Score (DDS): 0.275
Top Committers
Name Email Commits
Jari Oksanen j****n@o****i 181
jarioksa j****a@e****b 22
Gavin Simpson u****s@g****m 8
Duncan Murdoch m****n@g****m 2
Frans van Dunné F****D 2
frans g****b@s****t 1
gsimpson g****n@e****b 1
Committer Domains (Top 20 + Academic)
southshield.net: 1 oulu.fi: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 1
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • fvlampe (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 596 last-month
  • Total docker downloads: 20,392
  • Total dependent packages: 2
  • Total dependent repositories: 2
  • Total versions: 11
  • Total maintainers: 1
cran.r-project.org: vegan3d

Static and Dynamic 3D and Editable Interactive Plots for the 'vegan' Package

  • Versions: 11
  • Dependent Packages: 2
  • Dependent Repositories: 2
  • Downloads: 596 Last month
  • Docker Downloads: 20,392
Rankings
Forks count: 12.2%
Stargazers count: 12.2%
Docker downloads count: 12.6%
Dependent packages count: 13.7%
Average: 14.1%
Downloads: 15.0%
Dependent repos count: 19.2%
Maintainers (1)
jhoksane@gmail.com
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.2.0 depends
  • vegan >= 2.3 depends
  • cluster * imports
  • rgl * imports
  • scatterplot3d >= 0.3 imports