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Vicus

Vicus: Exploiting local structures to improve network-based analysis of biological data

https://github.com/rikenbit/vicus

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (8.7%) to scientific vocabulary
Last synced: 9 months ago · JSON representation

Repository

Vicus: Exploiting local structures to improve network-based analysis of biological data

Basic Info
  • Host: GitHub
  • Owner: rikenbit
  • License: other
  • Language: HTML
  • Default Branch: main
  • Size: 235 KB
Statistics
  • Stars: 1
  • Watchers: 4
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created about 3 years ago · Last pushed about 3 years ago

https://github.com/rikenbit/Vicus/blob/main/ 

[![DOI](https://zenodo.org/badge/617712827.svg)](https://zenodo.org/badge/latestdoi/617712827)
[![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/Vicus)](
https://cran.r-project.org/package=Vicus)
[![Downloads](https://cranlogs.r-pkg.org/badges/Vicus)](https://CRAN.R-project.org/package=Vicus)
[![Total Downloads](https://cranlogs.r-pkg.org/badges/grand-total/Vicus?color=orange)](https://CRAN.R-project.org/package=Vicus)
[![:name status badge](https://rikenbit.r-universe.dev/badges/:name)](https://rikenbit.r-universe.dev)
[![:registry status badge](https://rikenbit.r-universe.dev/badges/:registry)](https://rikenbit.r-universe.dev)
[![:total status badge](https://rikenbit.r-universe.dev/badges/:total)](https://rikenbit.r-universe.dev)
[![Vicus status badge](https://rikenbit.r-universe.dev/badges/Vicus)](https://rikenbit.r-universe.dev)
![GitHub Actions](https://github.com/rikenbit/Vicus/actions/workflows/build_test_push.yml/badge.svg)

# Vicus
R package for graph embedding by Vicus method

## Installation

======
~~~~
git clone https://github.com/rikenbit/Vicus/
R CMD INSTALL Vicus
~~~~
or type the code below in the R console window
~~~~
library(devtools)
devtools::install_github("rikenbit/Vicus")
~~~~

## References
======
- Wang B, et al., Vicus: Exploiting local structures to improve network-based analysis of biological data. PLOS Computational Biology. 13(10), e1005621, 2017

## Contributing

If you have suggestions for how `Vicus` could be improved, or want to report a bug, open an issue! We'd love all and any contributions.

For more, check out the [Contributing Guide](CONTRIBUTING.md).

## Authors
- Koki Tsuyuzaki

Owner

  • Name: RIKEN BiT
  • Login: rikenbit
  • Kind: organization
  • Location: Japan

Laboratory for Bioinformatics Research, RIKEN Center for Biosystems Dynamics Research

GitHub Events

Total
Last Year

Packages

  • Total packages: 1
  • Total downloads:
    • cran 193 last-month
  • Total docker downloads: 37
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 1
  • Total maintainers: 1
cran.r-project.org: Vicus

Exploiting Local Structures to Improve Network-Based Analysis of Biological Data

  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 193 Last month
  • Docker Downloads: 37
Rankings
Dependent packages count: 29.8%
Dependent repos count: 35.5%
Average: 51.6%
Downloads: 89.6%
Maintainers (1)
k.t.the-answer@hotmail.co.jp
Last synced: 10 months ago

Dependencies

.github/workflows/build_test_push.yml actions
  • actions/checkout v2 composite
  • docker/build-push-action v1 composite
  • docker/login-action v1 composite
DESCRIPTION cran
  • R >= 3.4.0 depends
  • Matrix * imports
  • RANN * imports
  • RSpectra * imports
  • methods * imports
  • utils * imports
  • knitr * suggests
  • rmarkdown * suggests
  • scatterplot3d * suggests
  • testthat * suggests
Dockerfile docker
  • bioconductor/bioconductor_docker devel build