https://github.com/cthoyt/symptomontology
The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance reported by a patient indicative of a disease”. Understanding the close relationship of Signs and Symptoms, where Signs are the objective observation of an illness, the Symptom Ontology will work to broaden it’s scope to capture and document in a more robust manor these two sets of terms. Understanding that at times, the same term may be both a Sign and a Symptom. The Symptom Ontology is available under CC0 license (https://creativecommons.org/publicdomain/zero/1.0/).
https://github.com/cthoyt/swords-uu
Implementation of the SWORDS framework for Utrecht University.
https://github.com/cthoyt/scikit-kge
Python library to compute knowledge graph embeddings
https://github.com/cthoyt/sfi
An implementation of the Solubility Forecast Index (SFI)
https://github.com/cthoyt/semantic-python-overview
(subjective) overview of projects which are related both to python and semantic technologies (RDF, OWL, Reasoning, ...)
https://github.com/cthoyt/rexmex
A general purpose recommender metrics library for fair evaluation.
https://github.com/cthoyt/pytorch_geometric
Graph Neural Network Library for PyTorch
https://github.com/cthoyt/pykeen
🤖 A Python library for learning and evaluating knowledge graph embeddings
https://github.com/cthoyt/provisional_cell_ontology
Draft cell type definitions from data - candidates for inclusion in CL
https://github.com/cthoyt/plant-trait-ontology
Explore the Plant Trait Ontology on the Planteome site.
https://github.com/cthoyt/planaria-ontology
PLANA, the PLANarian Anatomy Ontology, encompasses the anatomy of developmental stages and adult biotypes of Schmidtea mediterranea.
https://github.com/cthoyt/ontology-development-kit
Bootstrap an OBO Library ontology
https://github.com/cthoyt/pco
An ontology about groups of interacting organisms such as populations and communities
https://github.com/cthoyt/covid19kg
COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology
https://github.com/cthoyt/ontogpt
GPT-based ontological extraction tools, including SPIRES
https://github.com/cthoyt/ohmi
OHMI: The Ontology of Host-Microbiome Interactions