cheetah-accelerator
Fast and differentiable particle accelerator optics simulation for reinforcement learning and optimisation applications.
mpskit.jl
A Julia package dedicated to simulating quantum many-body systems using Matrix Product States (MPS)
cytoscape.js-cise
An implementation of the circular layout algorithm by Dogrusoz et al. as a Cytoscape.js extension
CoSim Toolbox - Making HELICS Co-Simulations Easier
CoSim Toolbox - Making HELICS Co-Simulations Easier - Published in JOSS (2026)
vak
A neural network framework for researchers studying acoustic communication
corpus-annotation-graph-builder
Corpus Annotation Graph builder (CAG) is an architectural framework that employs the build-and-annotate pattern for creating a graph.
fitz-main-website
A simple Laravel front end for the production version of the Fitzwilliam Museum website.
InspectorCell
InspectorCell: Finding Ground Truth in Multiplexed Microscopy Images - Published in JOSS (2022)
shotgun-metagenomics-analysis
Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
atropos
An NGS read trimming tool that is specific, sensitive, and speedy. (production)
scri
Python/numba code for manipulating time-dependent functions of spin-weighted spherical harmonics on future null infinity
hawen
hawen: time-harmonic wave modeling and inversion using hybridizable discontinuous Galerkin discretization - Published in JOSS (2021)
imea
imea: A Python package for extracting 2D and 3D shape measurements from images - Published in JOSS (2021)
aguaclara
An open-source Python package for designing and performing research on AguaClara water treatment plants.
Tagging Latency Estimator
Tagging Latency Estimator: A Standalone Software for Estimating Latency of Event-Related Potentials in P300-based Brain-Computer Interfaces - Published in JOSS (2023)
The Experiment Factory
The Experiment Factory: Reproducible Experiment Containers - Published in JOSS (2018)