SeqPanther
SeqPanther: Sequence manipulation and mutation statistics toolset - Published in JOSS (2023)
Phasik
Phasik: a Python package to identify system states in partially temporal networks - Published in JOSS (2023)
chatAI4R: Interactive Artificial Intelligence toolkit for Data Science in R
chatAI4R: Interactive Artificial Intelligence toolkit for Data Science in R - Published in JOSS (2026)
filter-functions
Efficient numerical calculation of generalized filter functions
gmm_diag and gmm_full
gmm_diag and gmm_full: C++ classes for multi-threaded Gaussian mixture models and Expectation-Maximisation - Published in JOSS (2017)
Solshade: Terrain-aware Solar Illumination Modelling using Digital Elevation Models and Orbital Geometry
Solshade: Terrain-aware Solar Illumination Modelling using Digital Elevation Models and Orbital Geometry - Published in JOSS (2026)
Scikit-Topt: A Python Library for Algorithm Development in Topology Optimization
Scikit-Topt: A Python Library for Algorithm Development in Topology Optimization - Published in JOSS (2025)
Bloch: a strongly typed, hardware-agnostic, hybrid quantum programming language
Bloch: a strongly typed, hardware-agnostic, hybrid quantum programming language - Published in JOSS (2026)
rGUIDANCE – alignment confidence score computation in R
rGUIDANCE – alignment confidence score computation in R - Published in JOSS (2019)
Fraggler
Fraggler: A Python Package and CLI Tool for Automated Fragment Analysis - Published in JOSS (2024)
einprot
einprot: flexible, easy-to-use, reproducible workflows for statistical analysis of quantitative proteomics data - Published in JOSS (2023)
MOAFS
MOAFS: A Massive Online Analysis library for feature selection in data streams - Published in JOSS (2020)
The Biddy BDD package
The Biddy BDD package - Published in JOSS (2019)
grapesAgri1
grapesAgri1: Collection of Shiny Apps for Data Analysis in Agriculture - Published in JOSS (2021)