https://github.com/cthoyt/scikit-kge
Python library to compute knowledge graph embeddings
https://github.com/cthoyt/sfi
An implementation of the Solubility Forecast Index (SFI)
https://github.com/cthoyt/semantic-python-overview
(subjective) overview of projects which are related both to python and semantic technologies (RDF, OWL, Reasoning, ...)
https://github.com/cthoyt/rexmex
A general purpose recommender metrics library for fair evaluation.
https://github.com/cthoyt/pytorch_geometric
Graph Neural Network Library for PyTorch
https://github.com/cthoyt/pykeen
🤖 A Python library for learning and evaluating knowledge graph embeddings
https://github.com/cthoyt/provisional_cell_ontology
Draft cell type definitions from data - candidates for inclusion in CL
https://github.com/cthoyt/plant-trait-ontology
Explore the Plant Trait Ontology on the Planteome site.
https://github.com/cthoyt/planaria-ontology
PLANA, the PLANarian Anatomy Ontology, encompasses the anatomy of developmental stages and adult biotypes of Schmidtea mediterranea.
https://github.com/cthoyt/ontology-development-kit
Bootstrap an OBO Library ontology
https://github.com/cthoyt/pco
An ontology about groups of interacting organisms such as populations and communities
https://github.com/cthoyt/covid19kg
COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology
https://github.com/cthoyt/ontogpt
GPT-based ontological extraction tools, including SPIRES
https://github.com/cthoyt/ohmi
OHMI: The Ontology of Host-Microbiome Interactions
https://github.com/cthoyt/nutritional-epidemiologic-ontologies
machine-readable nutritional epidemiologic (meta-)data